Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13030

Experiment: L-Histidine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS13025 and ABID97_RS13030 are separated by 85 nucleotidesABID97_RS13030 and ABID97_RS13035 are separated by 108 nucleotides ABID97_RS13025: ABID97_RS13025 - helix-turn-helix domain-containing protein, at 2,708,318 to 2,709,316 _RS13025 ABID97_RS13030: ABID97_RS13030 - AraC family transcriptional regulator, at 2,709,402 to 2,710,391 _RS13030 ABID97_RS13035: ABID97_RS13035 - AraC family transcriptional regulator, at 2,710,500 to 2,711,492 _RS13035 Position (kb) 2709 2710 2711Strain fitness (log2 ratio) -2 -1 0 1at 2708.487 kb on - strand, within ABID97_RS13025at 2709.344 kb on - strandat 2709.555 kb on + strand, within ABID97_RS13030at 2709.704 kb on - strand, within ABID97_RS13030at 2709.718 kb on + strand, within ABID97_RS13030at 2709.719 kb on - strand, within ABID97_RS13030at 2709.719 kb on - strand, within ABID97_RS13030at 2710.417 kb on - strandat 2710.462 kb on + strandat 2710.899 kb on + strand, within ABID97_RS13035at 2711.334 kb on + strand, within ABID97_RS13035at 2711.334 kb on + strand, within ABID97_RS13035

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
remove
2,708,487 - ABID97_RS13025 0.17 -0.4
2,709,344 - +0.3
2,709,555 + ABID97_RS13030 0.15 -0.4
2,709,704 - ABID97_RS13030 0.31 -0.4
2,709,718 + ABID97_RS13030 0.32 -0.8
2,709,719 - ABID97_RS13030 0.32 -0.0
2,709,719 - ABID97_RS13030 0.32 -0.2
2,710,417 - -2.3
2,710,462 + -0.5
2,710,899 + ABID97_RS13035 0.40 -0.5
2,711,334 + ABID97_RS13035 0.84 -0.3
2,711,334 + ABID97_RS13035 0.84 +0.6

Or see this region's nucleotide sequence