Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12900 and ABID97_RS12905 are separated by 17 nucleotides ABID97_RS12905 and ABID97_RS12910 overlap by 4 nucleotides ABID97_RS12910 and ABID97_RS12915 are separated by 123 nucleotides ABID97_RS12915 and ABID97_RS12920 are separated by 19 nucleotides ABID97_RS12920 and ABID97_RS12925 are separated by 18 nucleotides
ABID97_RS12900: ABID97_RS12900 - type VI secretion system protein TssA, at 2,673,748 to 2,675,316
_RS12900
ABID97_RS12905: ABID97_RS12905 - response regulator transcription factor, at 2,675,334 to 2,676,068
_RS12905
ABID97_RS12910: ABID97_RS12910 - ATP-binding protein, at 2,676,065 to 2,677,834
_RS12910
ABID97_RS12915: ABID97_RS12915 - hypothetical protein, at 2,677,958 to 2,678,098
_RS12915
ABID97_RS12920: ABID97_RS12920 - type VI secretion system contractile sheath small subunit, at 2,678,118 to 2,678,612
_RS12920
ABID97_RS12925: ABID97_RS12925 - type VI secretion system contractile sheath large subunit, at 2,678,631 to 2,680,118
_RS12925
Position (kb)
2676
2677
2678 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2675.343 kb on + strand at 2675.343 kb on + strand at 2675.344 kb on - strand at 2675.762 kb on - strand, within ABID97_RS12905 at 2675.995 kb on + strand at 2675.996 kb on - strand at 2676.093 kb on - strand at 2676.978 kb on + strand, within ABID97_RS12910 at 2677.269 kb on + strand, within ABID97_RS12910 at 2677.270 kb on - strand, within ABID97_RS12910 at 2677.683 kb on + strand at 2677.842 kb on + strand at 2677.842 kb on + strand at 2677.843 kb on - strand at 2677.843 kb on - strand at 2678.159 kb on + strand at 2678.569 kb on + strand at 2678.569 kb on + strand at 2678.569 kb on + strand at 2678.570 kb on - strand at 2678.570 kb on - strand at 2678.570 kb on - strand at 2678.746 kb on - strand at 2678.746 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 2,675,343 + +1.1 2,675,343 + +1.0 2,675,344 - -1.8 2,675,762 - ABID97_RS12905 0.58 +0.3 2,675,995 + +0.8 2,675,996 - -0.2 2,676,093 - -0.5 2,676,978 + ABID97_RS12910 0.52 -2.9 2,677,269 + ABID97_RS12910 0.68 +0.7 2,677,270 - ABID97_RS12910 0.68 +0.6 2,677,683 + +0.2 2,677,842 + +0.3 2,677,842 + -0.5 2,677,843 - -0.0 2,677,843 - +1.8 2,678,159 + -1.4 2,678,569 + -0.1 2,678,569 + +1.6 2,678,569 + +0.0 2,678,570 - +0.3 2,678,570 - -0.1 2,678,570 - -0.9 2,678,746 - +0.1 2,678,746 - -0.1
Or see this region's nucleotide sequence