Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12910

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12900 and ABID97_RS12905 are separated by 17 nucleotidesABID97_RS12905 and ABID97_RS12910 overlap by 4 nucleotidesABID97_RS12910 and ABID97_RS12915 are separated by 123 nucleotidesABID97_RS12915 and ABID97_RS12920 are separated by 19 nucleotidesABID97_RS12920 and ABID97_RS12925 are separated by 18 nucleotides ABID97_RS12900: ABID97_RS12900 - type VI secretion system protein TssA, at 2,673,748 to 2,675,316 _RS12900 ABID97_RS12905: ABID97_RS12905 - response regulator transcription factor, at 2,675,334 to 2,676,068 _RS12905 ABID97_RS12910: ABID97_RS12910 - ATP-binding protein, at 2,676,065 to 2,677,834 _RS12910 ABID97_RS12915: ABID97_RS12915 - hypothetical protein, at 2,677,958 to 2,678,098 _RS12915 ABID97_RS12920: ABID97_RS12920 - type VI secretion system contractile sheath small subunit, at 2,678,118 to 2,678,612 _RS12920 ABID97_RS12925: ABID97_RS12925 - type VI secretion system contractile sheath large subunit, at 2,678,631 to 2,680,118 _RS12925 Position (kb) 2676 2677 2678Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2675.343 kb on + strandat 2675.343 kb on + strandat 2675.344 kb on - strandat 2675.762 kb on - strand, within ABID97_RS12905at 2675.995 kb on + strandat 2675.996 kb on - strandat 2676.093 kb on - strandat 2676.978 kb on + strand, within ABID97_RS12910at 2677.269 kb on + strand, within ABID97_RS12910at 2677.270 kb on - strand, within ABID97_RS12910at 2677.683 kb on + strandat 2677.842 kb on + strandat 2677.842 kb on + strandat 2677.843 kb on - strandat 2677.843 kb on - strandat 2678.159 kb on + strandat 2678.569 kb on + strandat 2678.569 kb on + strandat 2678.569 kb on + strandat 2678.570 kb on - strandat 2678.570 kb on - strandat 2678.570 kb on - strandat 2678.746 kb on - strandat 2678.746 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,675,343 + +1.1
2,675,343 + +1.0
2,675,344 - -1.8
2,675,762 - ABID97_RS12905 0.58 +0.3
2,675,995 + +0.8
2,675,996 - -0.2
2,676,093 - -0.5
2,676,978 + ABID97_RS12910 0.52 -2.9
2,677,269 + ABID97_RS12910 0.68 +0.7
2,677,270 - ABID97_RS12910 0.68 +0.6
2,677,683 + +0.2
2,677,842 + +0.3
2,677,842 + -0.5
2,677,843 - -0.0
2,677,843 - +1.8
2,678,159 + -1.4
2,678,569 + -0.1
2,678,569 + +1.6
2,678,569 + +0.0
2,678,570 - +0.3
2,678,570 - -0.1
2,678,570 - -0.9
2,678,746 - +0.1
2,678,746 - -0.1

Or see this region's nucleotide sequence