Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12790

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12780 and ABID97_RS12785 are separated by 32 nucleotidesABID97_RS12785 and ABID97_RS12790 are separated by 11 nucleotidesABID97_RS12790 and ABID97_RS12795 overlap by 4 nucleotidesABID97_RS12795 and ABID97_RS12800 are separated by 116 nucleotides ABID97_RS12780: ABID97_RS12780 - hypothetical protein, at 2,649,141 to 2,649,512 _RS12780 ABID97_RS12785: ABID97_RS12785 - hypothetical protein, at 2,649,545 to 2,650,240 _RS12785 ABID97_RS12790: ABID97_RS12790 - substrate-binding domain-containing protein, at 2,650,252 to 2,651,142 _RS12790 ABID97_RS12795: ABID97_RS12795 - cytochrome c, at 2,651,139 to 2,651,546 _RS12795 ABID97_RS12800: ABID97_RS12800 - methanol/ethanol family PQQ-dependent dehydrogenase, at 2,651,663 to 2,653,489 _RS12800 Position (kb) 2650 2651 2652Strain fitness (log2 ratio) -1 0 1at 2649.301 kb on + strand, within ABID97_RS12780at 2649.409 kb on + strand, within ABID97_RS12780at 2649.409 kb on + strand, within ABID97_RS12780at 2649.643 kb on - strand, within ABID97_RS12785at 2649.814 kb on - strand, within ABID97_RS12785at 2650.298 kb on + strandat 2650.649 kb on + strand, within ABID97_RS12790at 2650.766 kb on + strand, within ABID97_RS12790at 2650.767 kb on - strand, within ABID97_RS12790at 2650.769 kb on + strand, within ABID97_RS12790at 2650.898 kb on + strand, within ABID97_RS12790at 2650.898 kb on + strand, within ABID97_RS12790at 2650.899 kb on - strand, within ABID97_RS12790at 2651.203 kb on + strand, within ABID97_RS12795at 2651.204 kb on - strand, within ABID97_RS12795at 2651.431 kb on + strand, within ABID97_RS12795at 2651.449 kb on + strand, within ABID97_RS12795at 2651.633 kb on - strandat 2651.830 kb on - strandat 2651.830 kb on - strandat 2651.850 kb on + strand, within ABID97_RS12800at 2651.851 kb on - strand, within ABID97_RS12800at 2652.093 kb on + strand, within ABID97_RS12800at 2652.117 kb on + strand, within ABID97_RS12800at 2652.135 kb on + strand, within ABID97_RS12800at 2652.136 kb on - strand, within ABID97_RS12800

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,649,301 + ABID97_RS12780 0.43 +0.0
2,649,409 + ABID97_RS12780 0.72 -0.1
2,649,409 + ABID97_RS12780 0.72 +0.5
2,649,643 - ABID97_RS12785 0.14 -0.5
2,649,814 - ABID97_RS12785 0.39 -1.4
2,650,298 + +0.1
2,650,649 + ABID97_RS12790 0.45 -0.5
2,650,766 + ABID97_RS12790 0.58 -0.4
2,650,767 - ABID97_RS12790 0.58 +0.4
2,650,769 + ABID97_RS12790 0.58 +0.4
2,650,898 + ABID97_RS12790 0.73 -1.4
2,650,898 + ABID97_RS12790 0.73 -0.0
2,650,899 - ABID97_RS12790 0.73 -0.4
2,651,203 + ABID97_RS12795 0.16 +0.1
2,651,204 - ABID97_RS12795 0.16 -1.1
2,651,431 + ABID97_RS12795 0.72 -0.0
2,651,449 + ABID97_RS12795 0.76 +0.0
2,651,633 - -0.8
2,651,830 - -1.3
2,651,830 - -0.4
2,651,850 + ABID97_RS12800 0.10 +0.4
2,651,851 - ABID97_RS12800 0.10 +0.3
2,652,093 + ABID97_RS12800 0.24 +0.2
2,652,117 + ABID97_RS12800 0.25 -0.0
2,652,135 + ABID97_RS12800 0.26 +0.5
2,652,136 - ABID97_RS12800 0.26 +0.0

Or see this region's nucleotide sequence