Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12425 and ABID97_RS12430 are separated by 106 nucleotides ABID97_RS12430 and ABID97_RS12435 are separated by 0 nucleotides ABID97_RS12435 and ABID97_RS12440 are separated by 20 nucleotides
ABID97_RS12425: ABID97_RS12425 - LysR substrate-binding domain-containing protein, at 2,574,427 to 2,575,338
_RS12425
ABID97_RS12430: ABID97_RS12430 - tripartite tricarboxylate transporter substrate binding protein, at 2,575,445 to 2,576,437
_RS12430
ABID97_RS12435: ABID97_RS12435 - MaoC family dehydratase N-terminal domain-containing protein, at 2,576,438 to 2,577,343
_RS12435
ABID97_RS12440: ABID97_RS12440 - CaiB/BaiF CoA-transferase family protein, at 2,577,364 to 2,578,545
_RS12440
Position (kb)
2575
2576
2577 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2574.455 kb on + strand at 2574.491 kb on + strand at 2574.492 kb on - strand at 2574.492 kb on - strand at 2574.495 kb on + strand at 2574.495 kb on + strand at 2574.495 kb on + strand at 2574.495 kb on + strand at 2574.495 kb on + strand at 2574.495 kb on + strand at 2574.495 kb on + strand at 2574.496 kb on - strand at 2574.496 kb on - strand at 2574.527 kb on + strand, within ABID97_RS12425 at 2575.080 kb on - strand, within ABID97_RS12425 at 2575.366 kb on + strand at 2575.724 kb on + strand, within ABID97_RS12430 at 2575.775 kb on + strand, within ABID97_RS12430 at 2575.776 kb on - strand, within ABID97_RS12430 at 2575.928 kb on + strand, within ABID97_RS12430 at 2575.929 kb on - strand, within ABID97_RS12430 at 2576.015 kb on + strand, within ABID97_RS12430 at 2576.169 kb on + strand, within ABID97_RS12430 at 2576.639 kb on + strand, within ABID97_RS12435 at 2576.640 kb on - strand, within ABID97_RS12435 at 2576.640 kb on - strand, within ABID97_RS12435 at 2576.640 kb on - strand, within ABID97_RS12435
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 2,574,455 + +0.2 2,574,491 + +0.0 2,574,492 - +0.2 2,574,492 - -0.2 2,574,495 + -0.3 2,574,495 + -0.9 2,574,495 + -2.3 2,574,495 + -0.1 2,574,495 + -0.4 2,574,495 + +1.1 2,574,495 + -1.3 2,574,496 - -1.7 2,574,496 - +2.2 2,574,527 + ABID97_RS12425 0.11 +1.0 2,575,080 - ABID97_RS12425 0.72 -1.0 2,575,366 + +0.5 2,575,724 + ABID97_RS12430 0.28 -2.0 2,575,775 + ABID97_RS12430 0.33 -0.1 2,575,776 - ABID97_RS12430 0.33 -0.4 2,575,928 + ABID97_RS12430 0.49 -0.4 2,575,929 - ABID97_RS12430 0.49 +0.3 2,576,015 + ABID97_RS12430 0.57 -0.1 2,576,169 + ABID97_RS12430 0.73 +0.8 2,576,639 + ABID97_RS12435 0.22 -0.1 2,576,640 - ABID97_RS12435 0.22 -0.2 2,576,640 - ABID97_RS12435 0.22 -0.3 2,576,640 - ABID97_RS12435 0.22 +0.1
Or see this region's nucleotide sequence