Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11965

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11955 and ABID97_RS11960 overlap by 31 nucleotidesABID97_RS11960 and ABID97_RS11965 are separated by 147 nucleotidesABID97_RS11965 and ABID97_RS11970 are separated by 80 nucleotides ABID97_RS11955: ABID97_RS11955 - sigma-54 dependent transcriptional regulator, at 2,466,567 to 2,468,009 _RS11955 ABID97_RS11960: ABID97_RS11960 - hypothetical protein, at 2,467,979 to 2,468,215 _RS11960 ABID97_RS11965: ABID97_RS11965 - PAS domain S-box protein, at 2,468,363 to 2,472,973 _RS11965 ABID97_RS11970: ABID97_RS11970 - chemotaxis protein CheB, at 2,473,054 to 2,474,067 _RS11970 Position (kb) 2468 2469 2470 2471 2472 2473Strain fitness (log2 ratio) -1 0 1at 2467.915 kb on - strandat 2468.160 kb on + strand, within ABID97_RS11960at 2468.161 kb on - strand, within ABID97_RS11960at 2468.196 kb on + strandat 2468.197 kb on - strandat 2468.197 kb on - strandat 2468.748 kb on - strandat 2468.981 kb on + strand, within ABID97_RS11965at 2468.982 kb on - strand, within ABID97_RS11965at 2468.985 kb on - strand, within ABID97_RS11965at 2469.405 kb on - strand, within ABID97_RS11965at 2469.704 kb on + strand, within ABID97_RS11965at 2469.705 kb on - strand, within ABID97_RS11965at 2469.848 kb on + strand, within ABID97_RS11965at 2470.205 kb on + strand, within ABID97_RS11965at 2470.205 kb on + strand, within ABID97_RS11965at 2470.467 kb on - strand, within ABID97_RS11965at 2471.099 kb on + strand, within ABID97_RS11965at 2471.100 kb on - strand, within ABID97_RS11965at 2471.118 kb on - strand, within ABID97_RS11965at 2471.280 kb on - strand, within ABID97_RS11965at 2471.427 kb on - strand, within ABID97_RS11965at 2471.498 kb on + strand, within ABID97_RS11965at 2473.028 kb on - strandat 2473.114 kb on + strandat 2473.114 kb on + strandat 2473.409 kb on - strand, within ABID97_RS11970

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,467,915 - -0.3
2,468,160 + ABID97_RS11960 0.76 +1.1
2,468,161 - ABID97_RS11960 0.77 -1.5
2,468,196 + -0.5
2,468,197 - +0.3
2,468,197 - +0.1
2,468,748 - +0.3
2,468,981 + ABID97_RS11965 0.13 +0.2
2,468,982 - ABID97_RS11965 0.13 -0.2
2,468,985 - ABID97_RS11965 0.13 -0.7
2,469,405 - ABID97_RS11965 0.23 -0.7
2,469,704 + ABID97_RS11965 0.29 +0.6
2,469,705 - ABID97_RS11965 0.29 +0.1
2,469,848 + ABID97_RS11965 0.32 -0.0
2,470,205 + ABID97_RS11965 0.40 -1.1
2,470,205 + ABID97_RS11965 0.40 +0.0
2,470,467 - ABID97_RS11965 0.46 +0.3
2,471,099 + ABID97_RS11965 0.59 +0.2
2,471,100 - ABID97_RS11965 0.59 +0.1
2,471,118 - ABID97_RS11965 0.60 +0.1
2,471,280 - ABID97_RS11965 0.63 +0.3
2,471,427 - ABID97_RS11965 0.66 +0.6
2,471,498 + ABID97_RS11965 0.68 +0.1
2,473,028 - -0.5
2,473,114 + -0.5
2,473,114 + -0.7
2,473,409 - ABID97_RS11970 0.35 -0.7

Or see this region's nucleotide sequence