Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11405

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11395 and ABID97_RS11400 are separated by 33 nucleotidesABID97_RS11400 and ABID97_RS11405 are separated by 56 nucleotidesABID97_RS11405 and ABID97_RS11410 overlap by 4 nucleotidesABID97_RS11410 and ABID97_RS11415 are separated by 17 nucleotidesABID97_RS11415 and ABID97_RS11420 are separated by 261 nucleotides ABID97_RS11395: ABID97_RS11395 - alpha/beta fold hydrolase, at 2,353,798 to 2,354,610 _RS11395 ABID97_RS11400: ABID97_RS11400 - FAD-dependent oxidoreductase, at 2,354,644 to 2,355,420 _RS11400 ABID97_RS11405: ABID97_RS11405 - 2Fe-2S iron-sulfur cluster binding domain-containing protein, at 2,355,477 to 2,355,755 _RS11405 ABID97_RS11410: ABID97_RS11410 - ferredoxin, at 2,355,752 to 2,356,079 _RS11410 ABID97_RS11415: ABID97_RS11415 - 2Fe-2S iron-sulfur cluster-binding protein, at 2,356,097 to 2,356,402 _RS11415 ABID97_RS11420: ABID97_RS11420 - iron-containing redox enzyme family protein, at 2,356,664 to 2,357,396 _RS11420 Position (kb) 2355 2356Strain fitness (log2 ratio) -1 0 1 2at 2354.519 kb on + strand, within ABID97_RS11395at 2354.519 kb on + strand, within ABID97_RS11395at 2354.960 kb on + strand, within ABID97_RS11400at 2355.422 kb on + strandat 2355.425 kb on - strandat 2355.478 kb on + strandat 2355.978 kb on + strand, within ABID97_RS11410at 2356.475 kb on + strandat 2356.476 kb on - strandat 2356.578 kb on - strandat 2356.645 kb on - strandat 2356.675 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,354,519 + ABID97_RS11395 0.89 -0.6
2,354,519 + ABID97_RS11395 0.89 -0.5
2,354,960 + ABID97_RS11400 0.41 +0.4
2,355,422 + -0.7
2,355,425 - +0.2
2,355,478 + +2.1
2,355,978 + ABID97_RS11410 0.69 +0.4
2,356,475 + +0.1
2,356,476 - +0.2
2,356,578 - -0.1
2,356,645 - -0.2
2,356,675 - -0.5

Or see this region's nucleotide sequence