Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11255

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11245 and ABID97_RS11250 are separated by 14 nucleotidesABID97_RS11250 and ABID97_RS11255 are separated by 19 nucleotidesABID97_RS11255 and ABID97_RS11260 are separated by 15 nucleotidesABID97_RS11260 and ABID97_RS11265 are separated by 122 nucleotides ABID97_RS11245: ABID97_RS11245 - putative quinol monooxygenase, at 2,325,617 to 2,325,907 _RS11245 ABID97_RS11250: ABID97_RS11250 - SDR family oxidoreductase, at 2,325,922 to 2,326,716 _RS11250 ABID97_RS11255: ABID97_RS11255 - type 1 glutamine amidotransferase domain-containing protein, at 2,326,736 to 2,327,578 _RS11255 ABID97_RS11260: ABID97_RS11260 - type 1 glutamine amidotransferase domain-containing protein, at 2,327,594 to 2,328,301 _RS11260 ABID97_RS11265: ABID97_RS11265 - LysR family transcriptional regulator, at 2,328,424 to 2,329,320 _RS11265 Position (kb) 2326 2327 2328Strain fitness (log2 ratio) -1 0 1 2at 2326.413 kb on + strand, within ABID97_RS11250at 2326.442 kb on + strand, within ABID97_RS11250at 2327.436 kb on + strand, within ABID97_RS11255at 2328.073 kb on - strand, within ABID97_RS11260at 2328.201 kb on + strand, within ABID97_RS11260at 2328.201 kb on + strand, within ABID97_RS11260at 2328.305 kb on + strandat 2328.305 kb on + strandat 2328.305 kb on + strandat 2328.305 kb on + strandat 2328.306 kb on - strandat 2328.306 kb on - strandat 2328.306 kb on - strandat 2328.306 kb on - strandat 2328.306 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,326,413 + ABID97_RS11250 0.62 -0.6
2,326,442 + ABID97_RS11250 0.65 -0.2
2,327,436 + ABID97_RS11255 0.83 -0.1
2,328,073 - ABID97_RS11260 0.68 +0.9
2,328,201 + ABID97_RS11260 0.86 -0.4
2,328,201 + ABID97_RS11260 0.86 +1.0
2,328,305 + -1.1
2,328,305 + -0.5
2,328,305 + -0.9
2,328,305 + -0.5
2,328,306 - +0.7
2,328,306 - +0.6
2,328,306 - +2.1
2,328,306 - +0.3
2,328,306 - -0.2

Or see this region's nucleotide sequence