Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10770

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10760 and ABID97_RS10765 are separated by 23 nucleotidesABID97_RS10765 and ABID97_RS10770 are separated by 111 nucleotidesABID97_RS10770 and ABID97_RS10775 are separated by 372 nucleotides ABID97_RS10760: ABID97_RS10760 - MotA/TolQ/ExbB proton channel family protein, at 2,231,981 to 2,232,697 _RS10760 ABID97_RS10765: ABID97_RS10765 - energy transducer TonB, at 2,232,721 to 2,233,428 _RS10765 ABID97_RS10770: ABID97_RS10770 - (2Fe-2S)-binding protein, at 2,233,540 to 2,233,812 _RS10770 ABID97_RS10775: ABID97_RS10775 - TonB-dependent receptor, at 2,234,185 to 2,236,536 _RS10775 Position (kb) 2233 2234Strain fitness (log2 ratio) -1 0 1 2at 2232.759 kb on - strandat 2232.759 kb on - strandat 2233.487 kb on + strandat 2233.488 kb on - strandat 2233.500 kb on + strandat 2233.501 kb on - strandat 2233.900 kb on - strandat 2234.079 kb on + strandat 2234.080 kb on - strandat 2234.080 kb on - strandat 2234.080 kb on - strandat 2234.449 kb on + strand, within ABID97_RS10775at 2234.449 kb on + strand, within ABID97_RS10775at 2234.573 kb on - strand, within ABID97_RS10775at 2234.737 kb on + strand, within ABID97_RS10775

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,232,759 - +2.6
2,232,759 - +1.5
2,233,487 + +0.1
2,233,488 - -0.4
2,233,500 + +0.5
2,233,501 - -0.5
2,233,900 - +0.8
2,234,079 + +1.4
2,234,080 - +0.3
2,234,080 - +0.6
2,234,080 - +1.5
2,234,449 + ABID97_RS10775 0.11 +2.1
2,234,449 + ABID97_RS10775 0.11 +2.1
2,234,573 - ABID97_RS10775 0.16 +2.6
2,234,737 + ABID97_RS10775 0.23 +0.2

Or see this region's nucleotide sequence