Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09240 and ABID97_RS09245 overlap by 4 nucleotides ABID97_RS09245 and ABID97_RS09250 are separated by 4 nucleotides ABID97_RS09250 and ABID97_RS09255 overlap by 4 nucleotides
ABID97_RS09240: ABID97_RS09240 - FtsX-like permease family protein, at 1,942,604 to 1,943,866
_RS09240
ABID97_RS09245: ABID97_RS09245 - ABC transporter ATP-binding protein, at 1,943,863 to 1,944,597
_RS09245
ABID97_RS09250: ABID97_RS09250 - DUF2796 domain-containing protein, at 1,944,602 to 1,945,183
_RS09250
ABID97_RS09255: ABID97_RS09255 - sulfurtransferase, at 1,945,180 to 1,946,088
_RS09255
Position (kb) 1943
1944
1945 Strain fitness (log2 ratio) -1
0
1
2
3 at 1943.079 kb on + strand, within ABID97_RS09240 at 1943.079 kb on + strand, within ABID97_RS09240 at 1943.080 kb on - strand, within ABID97_RS09240 at 1943.508 kb on + strand, within ABID97_RS09240 at 1943.508 kb on + strand, within ABID97_RS09240 at 1943.658 kb on + strand, within ABID97_RS09240 at 1944.302 kb on + strand, within ABID97_RS09245 at 1945.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 1,943,079 + ABID97_RS09240 0.38 -0.3 1,943,079 + ABID97_RS09240 0.38 -0.5 1,943,080 - ABID97_RS09240 0.38 +0.1 1,943,508 + ABID97_RS09240 0.72 -0.7 1,943,508 + ABID97_RS09240 0.72 +3.0 1,943,658 + ABID97_RS09240 0.83 -0.2 1,944,302 + ABID97_RS09245 0.60 -0.3 1,945,248 - -0.5
Or see this region's nucleotide sequence