Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08860 and ABID97_RS08865 are separated by 16 nucleotides ABID97_RS08865 and ABID97_RS08870 overlap by 4 nucleotides ABID97_RS08870 and ABID97_RS08875 are separated by 46 nucleotides
ABID97_RS08860: ABID97_RS08860 - SDR family NAD(P)-dependent oxidoreductase, at 1,856,433 to 1,857,686
_RS08860
ABID97_RS08865: ABID97_RS08865 - cyclase family protein, at 1,857,703 to 1,858,516
_RS08865
ABID97_RS08870: ABID97_RS08870 - SDR family oxidoreductase, at 1,858,513 to 1,859,244
_RS08870
ABID97_RS08875: ABID97_RS08875 - ABC transporter substrate-binding protein, at 1,859,291 to 1,860,460
_RS08875
Position (kb) 1857
1858
1859 Strain fitness (log2 ratio) -1
0
1
2
3 at 1856.891 kb on + strand, within ABID97_RS08860 at 1857.261 kb on + strand, within ABID97_RS08860 at 1857.262 kb on - strand, within ABID97_RS08860 at 1857.367 kb on - strand, within ABID97_RS08860 at 1857.367 kb on - strand, within ABID97_RS08860 at 1858.200 kb on - strand, within ABID97_RS08865 at 1858.358 kb on + strand, within ABID97_RS08865 at 1858.361 kb on + strand, within ABID97_RS08865 at 1858.361 kb on + strand, within ABID97_RS08865
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 1,856,891 + ABID97_RS08860 0.37 +0.0 1,857,261 + ABID97_RS08860 0.66 +0.2 1,857,262 - ABID97_RS08860 0.66 +0.5 1,857,367 - ABID97_RS08860 0.74 +0.6 1,857,367 - ABID97_RS08860 0.74 +0.2 1,858,200 - ABID97_RS08865 0.61 -0.5 1,858,358 + ABID97_RS08865 0.80 +0.3 1,858,361 + ABID97_RS08865 0.81 +3.0 1,858,361 + ABID97_RS08865 0.81 +0.7
Or see this region's nucleotide sequence