Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08405

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08400 and ABID97_RS08405 are separated by 2 nucleotidesABID97_RS08405 and ABID97_RS08410 are separated by 121 nucleotidesABID97_RS08410 and ABID97_RS08415 are separated by 49 nucleotides ABID97_RS08400: ABID97_RS08400 - Hsp70 family protein, at 1,763,653 to 1,764,915 _RS08400 ABID97_RS08405: ABID97_RS08405 - lysine--tRNA ligase, at 1,764,918 to 1,766,480 _RS08405 ABID97_RS08410: ABID97_RS08410 - LON peptidase substrate-binding domain-containing protein, at 1,766,602 to 1,767,249 _RS08410 ABID97_RS08415: ABID97_RS08415 - YggT family protein, at 1,767,299 to 1,767,856 _RS08415 Position (kb) 1764 1765 1766 1767Strain fitness (log2 ratio) -1 0 1 2at 1764.065 kb on + strand, within ABID97_RS08400at 1764.066 kb on - strand, within ABID97_RS08400at 1764.066 kb on - strand, within ABID97_RS08400at 1764.066 kb on - strand, within ABID97_RS08400at 1764.110 kb on + strand, within ABID97_RS08400at 1764.111 kb on - strand, within ABID97_RS08400at 1764.111 kb on - strand, within ABID97_RS08400at 1764.401 kb on + strand, within ABID97_RS08400at 1764.641 kb on + strand, within ABID97_RS08400at 1764.725 kb on + strand, within ABID97_RS08400at 1764.726 kb on - strand, within ABID97_RS08400at 1766.756 kb on + strand, within ABID97_RS08410at 1766.756 kb on + strand, within ABID97_RS08410at 1766.757 kb on - strand, within ABID97_RS08410at 1766.757 kb on - strand, within ABID97_RS08410at 1766.757 kb on - strand, within ABID97_RS08410at 1766.757 kb on - strand, within ABID97_RS08410at 1766.757 kb on - strand, within ABID97_RS08410at 1767.149 kb on + strand, within ABID97_RS08410at 1767.149 kb on + strand, within ABID97_RS08410at 1767.150 kb on - strand, within ABID97_RS08410at 1767.150 kb on - strand, within ABID97_RS08410at 1767.154 kb on + strand, within ABID97_RS08410at 1767.154 kb on + strand, within ABID97_RS08410at 1767.155 kb on - strand, within ABID97_RS08410at 1767.166 kb on - strand, within ABID97_RS08410at 1767.268 kb on + strandat 1767.269 kb on - strandat 1767.269 kb on - strandat 1767.269 kb on - strandat 1767.374 kb on + strand, within ABID97_RS08415at 1767.374 kb on + strand, within ABID97_RS08415at 1767.375 kb on - strand, within ABID97_RS08415at 1767.375 kb on - strand, within ABID97_RS08415at 1767.375 kb on - strand, within ABID97_RS08415at 1767.375 kb on - strand, within ABID97_RS08415at 1767.375 kb on - strand, within ABID97_RS08415at 1767.383 kb on + strand, within ABID97_RS08415at 1767.383 kb on + strand, within ABID97_RS08415at 1767.384 kb on - strand, within ABID97_RS08415

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,764,065 + ABID97_RS08400 0.33 -0.2
1,764,066 - ABID97_RS08400 0.33 +0.0
1,764,066 - ABID97_RS08400 0.33 +1.8
1,764,066 - ABID97_RS08400 0.33 +0.0
1,764,110 + ABID97_RS08400 0.36 +0.2
1,764,111 - ABID97_RS08400 0.36 -1.4
1,764,111 - ABID97_RS08400 0.36 -0.5
1,764,401 + ABID97_RS08400 0.59 -0.6
1,764,641 + ABID97_RS08400 0.78 +0.2
1,764,725 + ABID97_RS08400 0.85 -0.5
1,764,726 - ABID97_RS08400 0.85 +0.0
1,766,756 + ABID97_RS08410 0.24 +0.5
1,766,756 + ABID97_RS08410 0.24 -0.4
1,766,757 - ABID97_RS08410 0.24 -0.8
1,766,757 - ABID97_RS08410 0.24 +0.0
1,766,757 - ABID97_RS08410 0.24 -0.5
1,766,757 - ABID97_RS08410 0.24 +0.2
1,766,757 - ABID97_RS08410 0.24 -1.0
1,767,149 + ABID97_RS08410 0.84 +0.2
1,767,149 + ABID97_RS08410 0.84 +0.4
1,767,150 - ABID97_RS08410 0.85 -1.2
1,767,150 - ABID97_RS08410 0.85 +0.2
1,767,154 + ABID97_RS08410 0.85 +0.4
1,767,154 + ABID97_RS08410 0.85 +1.2
1,767,155 - ABID97_RS08410 0.85 +0.3
1,767,166 - ABID97_RS08410 0.87 +0.3
1,767,268 + -0.7
1,767,269 - -0.3
1,767,269 - -0.7
1,767,269 - -1.2
1,767,374 + ABID97_RS08415 0.13 +0.4
1,767,374 + ABID97_RS08415 0.13 -0.1
1,767,375 - ABID97_RS08415 0.14 +0.8
1,767,375 - ABID97_RS08415 0.14 -1.3
1,767,375 - ABID97_RS08415 0.14 +1.2
1,767,375 - ABID97_RS08415 0.14 +0.4
1,767,375 - ABID97_RS08415 0.14 -0.5
1,767,383 + ABID97_RS08415 0.15 -0.3
1,767,383 + ABID97_RS08415 0.15 +0.3
1,767,384 - ABID97_RS08415 0.15 +0.5

Or see this region's nucleotide sequence