Strain Fitness in Variovorax sp. OAS795 around ABID97_RS06115

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS06105 and ABID97_RS06110 are separated by 76 nucleotidesABID97_RS06110 and ABID97_RS06115 are separated by 183 nucleotidesABID97_RS06115 and ABID97_RS06120 are separated by 25 nucleotides ABID97_RS06105: ABID97_RS06105 - hypothetical protein, at 1,290,466 to 1,290,666 _RS06105 ABID97_RS06110: ABID97_RS06110 - glycine zipper domain-containing protein, at 1,290,743 to 1,291,249 _RS06110 ABID97_RS06115: ABID97_RS06115 - hypothetical protein, at 1,291,433 to 1,292,170 _RS06115 ABID97_RS06120: ABID97_RS06120 - alpha/beta hydrolase-fold protein, at 1,292,196 to 1,293,176 _RS06120 Position (kb) 1291 1292 1293Strain fitness (log2 ratio) -1 0 1 2 3at 1290.963 kb on + strand, within ABID97_RS06110at 1290.963 kb on + strand, within ABID97_RS06110at 1290.963 kb on + strand, within ABID97_RS06110at 1290.963 kb on + strand, within ABID97_RS06110at 1290.964 kb on - strand, within ABID97_RS06110at 1290.964 kb on - strand, within ABID97_RS06110at 1290.964 kb on - strand, within ABID97_RS06110at 1290.972 kb on + strand, within ABID97_RS06110at 1290.972 kb on + strand, within ABID97_RS06110at 1290.972 kb on + strand, within ABID97_RS06110at 1290.973 kb on - strand, within ABID97_RS06110at 1290.993 kb on + strand, within ABID97_RS06110at 1290.994 kb on - strand, within ABID97_RS06110at 1290.994 kb on - strand, within ABID97_RS06110at 1291.009 kb on - strand, within ABID97_RS06110at 1291.009 kb on - strand, within ABID97_RS06110at 1291.240 kb on + strandat 1291.240 kb on + strandat 1291.295 kb on + strandat 1291.376 kb on + strandat 1291.376 kb on + strandat 1291.376 kb on + strandat 1291.377 kb on - strandat 1291.377 kb on - strandat 1291.420 kb on + strandat 1291.420 kb on + strandat 1291.421 kb on - strandat 1291.421 kb on - strandat 1291.670 kb on + strand, within ABID97_RS06115at 1291.913 kb on - strand, within ABID97_RS06115at 1292.263 kb on + strandat 1292.263 kb on + strandat 1292.263 kb on + strandat 1292.294 kb on - strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.317 kb on + strand, within ABID97_RS06120at 1292.318 kb on - strand, within ABID97_RS06120at 1292.318 kb on - strand, within ABID97_RS06120at 1292.318 kb on - strandat 1292.318 kb on - strand, within ABID97_RS06120at 1292.318 kb on - strand, within ABID97_RS06120at 1292.438 kb on - strand, within ABID97_RS06120at 1292.438 kb on - strand, within ABID97_RS06120at 1292.453 kb on - strand, within ABID97_RS06120at 1292.577 kb on + strand, within ABID97_RS06120at 1292.638 kb on + strand, within ABID97_RS06120at 1292.639 kb on - strand, within ABID97_RS06120at 1292.639 kb on - strand, within ABID97_RS06120at 1292.662 kb on + strand, within ABID97_RS06120at 1292.662 kb on + strand, within ABID97_RS06120at 1292.662 kb on + strand, within ABID97_RS06120at 1292.663 kb on - strand, within ABID97_RS06120at 1292.663 kb on - strand, within ABID97_RS06120at 1292.663 kb on - strand, within ABID97_RS06120at 1292.663 kb on - strand, within ABID97_RS06120at 1292.794 kb on + strand, within ABID97_RS06120at 1292.794 kb on + strand, within ABID97_RS06120at 1292.794 kb on + strand, within ABID97_RS06120at 1292.794 kb on + strand, within ABID97_RS06120at 1292.795 kb on - strand, within ABID97_RS06120at 1292.795 kb on - strand, within ABID97_RS06120at 1292.795 kb on - strand, within ABID97_RS06120at 1292.795 kb on - strand, within ABID97_RS06120at 1292.795 kb on - strand, within ABID97_RS06120at 1292.795 kb on - strand, within ABID97_RS06120at 1292.807 kb on - strand, within ABID97_RS06120at 1292.828 kb on - strand, within ABID97_RS06120at 1292.842 kb on + strand, within ABID97_RS06120at 1292.842 kb on + strand, within ABID97_RS06120at 1292.843 kb on - strand, within ABID97_RS06120at 1292.858 kb on - strand, within ABID97_RS06120

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,290,963 + ABID97_RS06110 0.43 -0.8
1,290,963 + ABID97_RS06110 0.43 -0.0
1,290,963 + ABID97_RS06110 0.43 +1.6
1,290,963 + ABID97_RS06110 0.43 -0.3
1,290,964 - ABID97_RS06110 0.44 -0.1
1,290,964 - ABID97_RS06110 0.44 -0.3
1,290,964 - ABID97_RS06110 0.44 +2.2
1,290,972 + ABID97_RS06110 0.45 +0.8
1,290,972 + ABID97_RS06110 0.45 +1.4
1,290,972 + ABID97_RS06110 0.45 +0.1
1,290,973 - ABID97_RS06110 0.45 +0.5
1,290,993 + ABID97_RS06110 0.49 +1.0
1,290,994 - ABID97_RS06110 0.50 +0.2
1,290,994 - ABID97_RS06110 0.50 +0.1
1,291,009 - ABID97_RS06110 0.52 +0.5
1,291,009 - ABID97_RS06110 0.52 -0.0
1,291,240 + +0.6
1,291,240 + +0.6
1,291,295 + +0.8
1,291,376 + +0.2
1,291,376 + +0.7
1,291,376 + +0.3
1,291,377 - -0.4
1,291,377 - -0.5
1,291,420 + -0.0
1,291,420 + -1.0
1,291,421 - +0.4
1,291,421 - +3.6
1,291,670 + ABID97_RS06115 0.32 +0.6
1,291,913 - ABID97_RS06115 0.65 +0.5
1,292,263 + -0.1
1,292,263 + +0.6
1,292,263 + +0.0
1,292,294 - ABID97_RS06120 0.10 +1.1
1,292,317 + ABID97_RS06120 0.12 +0.4
1,292,317 + ABID97_RS06120 0.12 -0.2
1,292,317 + ABID97_RS06120 0.12 +0.0
1,292,317 + ABID97_RS06120 0.12 +0.0
1,292,317 + ABID97_RS06120 0.12 +0.5
1,292,317 + ABID97_RS06120 0.12 -0.1
1,292,317 + ABID97_RS06120 0.12 +0.3
1,292,317 + ABID97_RS06120 0.12 +1.6
1,292,317 + ABID97_RS06120 0.12 -0.2
1,292,317 + ABID97_RS06120 0.12 +1.3
1,292,317 + ABID97_RS06120 0.12 +0.0
1,292,317 + ABID97_RS06120 0.12 -0.0
1,292,317 + ABID97_RS06120 0.12 +0.9
1,292,318 - ABID97_RS06120 0.12 +0.1
1,292,318 - ABID97_RS06120 0.12 +0.7
1,292,318 - +0.4
1,292,318 - ABID97_RS06120 0.12 -0.5
1,292,318 - ABID97_RS06120 0.12 -0.1
1,292,438 - ABID97_RS06120 0.25 +0.7
1,292,438 - ABID97_RS06120 0.25 -0.7
1,292,453 - ABID97_RS06120 0.26 +0.2
1,292,577 + ABID97_RS06120 0.39 +0.3
1,292,638 + ABID97_RS06120 0.45 +0.9
1,292,639 - ABID97_RS06120 0.45 -0.3
1,292,639 - ABID97_RS06120 0.45 +0.2
1,292,662 + ABID97_RS06120 0.48 -0.1
1,292,662 + ABID97_RS06120 0.48 -1.0
1,292,662 + ABID97_RS06120 0.48 +0.4
1,292,663 - ABID97_RS06120 0.48 +0.2
1,292,663 - ABID97_RS06120 0.48 -0.0
1,292,663 - ABID97_RS06120 0.48 -0.8
1,292,663 - ABID97_RS06120 0.48 +0.6
1,292,794 + ABID97_RS06120 0.61 +1.4
1,292,794 + ABID97_RS06120 0.61 +0.8
1,292,794 + ABID97_RS06120 0.61 +0.5
1,292,794 + ABID97_RS06120 0.61 +0.0
1,292,795 - ABID97_RS06120 0.61 -0.3
1,292,795 - ABID97_RS06120 0.61 -0.4
1,292,795 - ABID97_RS06120 0.61 +0.5
1,292,795 - ABID97_RS06120 0.61 +2.0
1,292,795 - ABID97_RS06120 0.61 +0.4
1,292,795 - ABID97_RS06120 0.61 -0.5
1,292,807 - ABID97_RS06120 0.62 +0.4
1,292,828 - ABID97_RS06120 0.64 +0.2
1,292,842 + ABID97_RS06120 0.66 +0.7
1,292,842 + ABID97_RS06120 0.66 -1.4
1,292,843 - ABID97_RS06120 0.66 -0.4
1,292,858 - ABID97_RS06120 0.67 -0.1

Or see this region's nucleotide sequence