Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04950 and ABID97_RS04955 overlap by 4 nucleotides ABID97_RS04955 and ABID97_RS04960 are separated by 28 nucleotides ABID97_RS04960 and ABID97_RS04965 overlap by 4 nucleotides
ABID97_RS04950: ABID97_RS04950 - filamentous hemagglutinin N-terminal domain-containing protein, at 1,031,335 to 1,036,881
_RS04950
ABID97_RS04955: ABID97_RS04955 - hypothetical protein, at 1,036,878 to 1,037,672
_RS04955
ABID97_RS04960: ABID97_RS04960 - ATP-binding protein, at 1,037,701 to 1,039,692
_RS04960
ABID97_RS04965: ABID97_RS04965 - ABC transporter substrate binding protein, at 1,039,689 to 1,040,738
_RS04965
Position (kb) 1037
1038
1039
1040 Strain fitness (log2 ratio) -2
-1
0
1 at 1036.708 kb on + strand at 1036.880 kb on - strand at 1036.933 kb on + strand at 1036.934 kb on - strand at 1036.934 kb on - strand at 1036.934 kb on - strand at 1037.035 kb on + strand, within ABID97_RS04955 at 1037.125 kb on + strand, within ABID97_RS04955 at 1037.359 kb on + strand, within ABID97_RS04955 at 1039.437 kb on - strand, within ABID97_RS04960 at 1040.081 kb on - strand, within ABID97_RS04965
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 1,036,708 + -0.7 1,036,880 - +1.2 1,036,933 + +1.1 1,036,934 - +0.1 1,036,934 - -0.4 1,036,934 - +0.4 1,037,035 + ABID97_RS04955 0.20 -0.6 1,037,125 + ABID97_RS04955 0.31 -1.0 1,037,359 + ABID97_RS04955 0.61 -0.5 1,039,437 - ABID97_RS04960 0.87 -1.9 1,040,081 - ABID97_RS04965 0.37 -1.0
Or see this region's nucleotide sequence