Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04535

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04530 and ABID97_RS04535 are separated by 42 nucleotidesABID97_RS04535 and ABID97_RS04540 are separated by 17 nucleotides ABID97_RS04530: ABID97_RS04530 - glycogen/starch/alpha-glucan phosphorylase, at 937,115 to 939,598 _RS04530 ABID97_RS04535: ABID97_RS04535 - glycogen synthase GlgA, at 939,641 to 941,125 _RS04535 ABID97_RS04540: ABID97_RS04540 - glucose-1-phosphate adenylyltransferase, at 941,143 to 942,447 _RS04540 Position (kb) 939 940 941 942Strain fitness (log2 ratio) -1 0 1at 938.823 kb on + strand, within ABID97_RS04530at 938.823 kb on + strand, within ABID97_RS04530at 938.824 kb on - strand, within ABID97_RS04530at 938.824 kb on - strand, within ABID97_RS04530at 938.824 kb on - strand, within ABID97_RS04530at 938.824 kb on - strand, within ABID97_RS04530at 938.931 kb on + strand, within ABID97_RS04530at 938.931 kb on + strand, within ABID97_RS04530at 939.033 kb on + strand, within ABID97_RS04530at 939.034 kb on - strand, within ABID97_RS04530at 939.034 kb on - strand, within ABID97_RS04530at 939.139 kb on - strand, within ABID97_RS04530at 939.312 kb on + strand, within ABID97_RS04530at 939.376 kb on - strandat 939.376 kb on - strandat 939.376 kb on - strandat 939.376 kb on - strandat 939.378 kb on + strandat 939.402 kb on + strandat 939.403 kb on - strandat 939.516 kb on + strandat 939.517 kb on - strandat 939.517 kb on - strandat 939.576 kb on + strandat 939.576 kb on + strandat 939.673 kb on - strandat 939.924 kb on + strand, within ABID97_RS04535at 939.925 kb on - strand, within ABID97_RS04535at 939.936 kb on + strand, within ABID97_RS04535at 939.937 kb on - strand, within ABID97_RS04535at 940.026 kb on + strand, within ABID97_RS04535at 940.027 kb on - strand, within ABID97_RS04535at 940.449 kb on + strand, within ABID97_RS04535at 940.450 kb on - strand, within ABID97_RS04535at 940.450 kb on - strand, within ABID97_RS04535at 940.450 kb on - strand, within ABID97_RS04535at 940.482 kb on + strand, within ABID97_RS04535at 940.522 kb on - strand, within ABID97_RS04535at 940.668 kb on + strand, within ABID97_RS04535at 940.669 kb on - strand, within ABID97_RS04535at 940.669 kb on - strand, within ABID97_RS04535at 940.846 kb on - strand, within ABID97_RS04535at 940.870 kb on - strand, within ABID97_RS04535at 941.118 kb on - strandat 941.118 kb on - strandat 941.528 kb on + strand, within ABID97_RS04540at 941.528 kb on + strand, within ABID97_RS04540at 941.528 kb on + strand, within ABID97_RS04540at 941.528 kb on + strand, within ABID97_RS04540at 941.529 kb on - strand, within ABID97_RS04540at 941.529 kb on - strand, within ABID97_RS04540at 941.529 kb on - strand, within ABID97_RS04540at 941.529 kb on - strand, within ABID97_RS04540at 941.529 kb on - strand, within ABID97_RS04540at 941.529 kb on - strand, within ABID97_RS04540at 941.609 kb on + strand, within ABID97_RS04540at 941.766 kb on - strand, within ABID97_RS04540at 941.771 kb on + strand, within ABID97_RS04540at 941.789 kb on + strand, within ABID97_RS04540at 941.790 kb on - strand, within ABID97_RS04540at 941.790 kb on - strand, within ABID97_RS04540at 941.790 kb on - strand, within ABID97_RS04540at 941.790 kb on - strand, within ABID97_RS04540at 941.790 kb on - strand, within ABID97_RS04540at 941.991 kb on - strand, within ABID97_RS04540at 942.003 kb on - strand, within ABID97_RS04540at 942.032 kb on + strand, within ABID97_RS04540at 942.032 kb on + strand, within ABID97_RS04540at 942.032 kb on + strand, within ABID97_RS04540at 942.033 kb on - strand, within ABID97_RS04540at 942.033 kb on - strand, within ABID97_RS04540at 942.033 kb on - strand, within ABID97_RS04540at 942.101 kb on + strand, within ABID97_RS04540

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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938,823 + ABID97_RS04530 0.69 +0.1
938,823 + ABID97_RS04530 0.69 -1.5
938,824 - ABID97_RS04530 0.69 +0.0
938,824 - ABID97_RS04530 0.69 -0.7
938,824 - ABID97_RS04530 0.69 +0.4
938,824 - ABID97_RS04530 0.69 -0.6
938,931 + ABID97_RS04530 0.73 -0.4
938,931 + ABID97_RS04530 0.73 -0.7
939,033 + ABID97_RS04530 0.77 -0.8
939,034 - ABID97_RS04530 0.77 +0.8
939,034 - ABID97_RS04530 0.77 +0.8
939,139 - ABID97_RS04530 0.81 -0.3
939,312 + ABID97_RS04530 0.88 -0.3
939,376 - -0.3
939,376 - -0.7
939,376 - +0.2
939,376 - +0.0
939,378 + -0.2
939,402 + +0.5
939,403 - -0.1
939,516 + -1.0
939,517 - -0.9
939,517 - +0.6
939,576 + -0.4
939,576 + -0.7
939,673 - +0.1
939,924 + ABID97_RS04535 0.19 +0.0
939,925 - ABID97_RS04535 0.19 +0.1
939,936 + ABID97_RS04535 0.20 -0.0
939,937 - ABID97_RS04535 0.20 +1.2
940,026 + ABID97_RS04535 0.26 -0.3
940,027 - ABID97_RS04535 0.26 +0.3
940,449 + ABID97_RS04535 0.54 -1.2
940,450 - ABID97_RS04535 0.54 -1.2
940,450 - ABID97_RS04535 0.54 +0.7
940,450 - ABID97_RS04535 0.54 -0.9
940,482 + ABID97_RS04535 0.57 -0.5
940,522 - ABID97_RS04535 0.59 +0.2
940,668 + ABID97_RS04535 0.69 -0.1
940,669 - ABID97_RS04535 0.69 +0.5
940,669 - ABID97_RS04535 0.69 -0.7
940,846 - ABID97_RS04535 0.81 +0.6
940,870 - ABID97_RS04535 0.83 +0.6
941,118 - -0.2
941,118 - -0.4
941,528 + ABID97_RS04540 0.30 -0.2
941,528 + ABID97_RS04540 0.30 +0.3
941,528 + ABID97_RS04540 0.30 -1.7
941,528 + ABID97_RS04540 0.30 -0.6
941,529 - ABID97_RS04540 0.30 +0.2
941,529 - ABID97_RS04540 0.30 -0.4
941,529 - ABID97_RS04540 0.30 +0.7
941,529 - ABID97_RS04540 0.30 -0.5
941,529 - ABID97_RS04540 0.30 -0.8
941,529 - ABID97_RS04540 0.30 -0.4
941,609 + ABID97_RS04540 0.36 -0.5
941,766 - ABID97_RS04540 0.48 +0.2
941,771 + ABID97_RS04540 0.48 -0.5
941,789 + ABID97_RS04540 0.50 +1.3
941,790 - ABID97_RS04540 0.50 +0.5
941,790 - ABID97_RS04540 0.50 -0.6
941,790 - ABID97_RS04540 0.50 +0.1
941,790 - ABID97_RS04540 0.50 +0.7
941,790 - ABID97_RS04540 0.50 -1.0
941,991 - ABID97_RS04540 0.65 -0.1
942,003 - ABID97_RS04540 0.66 -0.7
942,032 + ABID97_RS04540 0.68 -0.4
942,032 + ABID97_RS04540 0.68 -0.1
942,032 + ABID97_RS04540 0.68 -1.4
942,033 - ABID97_RS04540 0.68 -0.3
942,033 - ABID97_RS04540 0.68 +0.2
942,033 - ABID97_RS04540 0.68 +0.6
942,101 + ABID97_RS04540 0.73 +0.0

Or see this region's nucleotide sequence