Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04450 and ABID97_RS04455 are separated by 2 nucleotides ABID97_RS04455 and ABID97_RS04460 overlap by 4 nucleotides ABID97_RS04460 and ABID97_RS04465 overlap by 4 nucleotides
ABID97_RS04450: ABID97_RS04450 - ABC transporter permease subunit, at 921,713 to 922,717
_RS04450
ABID97_RS04455: ABID97_RS04455 - ABC transporter permease subunit, at 922,720 to 923,625
_RS04455
ABID97_RS04460: ABID97_RS04460 - ABC transporter ATP-binding protein, at 923,622 to 924,653
_RS04460
ABID97_RS04465: ABID97_RS04465 - dipeptide ABC transporter ATP-binding protein, at 924,650 to 925,693
_RS04465
Position (kb) 923
924
925 Strain fitness (log2 ratio) -2
-1
0
1 at 922.685 kb on + strand at 922.685 kb on + strand at 922.685 kb on + strand at 922.686 kb on - strand at 923.248 kb on + strand, within ABID97_RS04455 at 923.248 kb on + strand, within ABID97_RS04455 at 923.249 kb on - strand, within ABID97_RS04455 at 923.296 kb on + strand, within ABID97_RS04455 at 923.297 kb on - strand, within ABID97_RS04455 at 924.043 kb on + strand, within ABID97_RS04460 at 924.306 kb on + strand, within ABID97_RS04460 at 924.306 kb on + strand, within ABID97_RS04460 at 924.306 kb on + strand, within ABID97_RS04460 at 924.306 kb on + strand, within ABID97_RS04460 at 924.307 kb on - strand, within ABID97_RS04460 at 924.307 kb on - strand, within ABID97_RS04460 at 924.369 kb on + strand, within ABID97_RS04460 at 924.498 kb on + strand, within ABID97_RS04460 at 924.499 kb on - strand, within ABID97_RS04460 at 924.704 kb on + strand at 924.704 kb on + strand at 924.704 kb on + strand at 924.704 kb on + strand at 924.704 kb on + strand at 924.705 kb on - strand at 924.705 kb on - strand at 925.112 kb on + strand, within ABID97_RS04465 at 925.283 kb on + strand, within ABID97_RS04465 at 925.283 kb on + strand, within ABID97_RS04465 at 925.346 kb on + strand, within ABID97_RS04465 at 925.346 kb on + strand, within ABID97_RS04465 at 925.347 kb on - strand, within ABID97_RS04465 at 925.409 kb on + strand, within ABID97_RS04465 at 925.410 kb on - strand, within ABID97_RS04465
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 922,685 + +0.1 922,685 + +0.8 922,685 + +0.4 922,686 - -0.4 923,248 + ABID97_RS04455 0.58 -1.3 923,248 + ABID97_RS04455 0.58 +1.0 923,249 - ABID97_RS04455 0.58 -0.3 923,296 + ABID97_RS04455 0.64 -0.3 923,297 - ABID97_RS04455 0.64 -0.2 924,043 + ABID97_RS04460 0.41 +1.4 924,306 + ABID97_RS04460 0.66 +0.5 924,306 + ABID97_RS04460 0.66 -0.5 924,306 + ABID97_RS04460 0.66 -1.2 924,306 + ABID97_RS04460 0.66 -0.4 924,307 - ABID97_RS04460 0.66 +0.2 924,307 - ABID97_RS04460 0.66 -0.8 924,369 + ABID97_RS04460 0.72 -0.9 924,498 + ABID97_RS04460 0.85 -1.2 924,499 - ABID97_RS04460 0.85 -1.0 924,704 + -0.3 924,704 + -1.4 924,704 + -0.3 924,704 + +0.4 924,704 + -2.6 924,705 - -0.6 924,705 - +0.2 925,112 + ABID97_RS04465 0.44 -1.3 925,283 + ABID97_RS04465 0.61 +0.7 925,283 + ABID97_RS04465 0.61 -0.4 925,346 + ABID97_RS04465 0.67 -0.2 925,346 + ABID97_RS04465 0.67 +1.4 925,347 - ABID97_RS04465 0.67 +0.0 925,409 + ABID97_RS04465 0.73 +0.0 925,410 - ABID97_RS04465 0.73 +0.2
Or see this region's nucleotide sequence