Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04115 and ABID97_RS04120 are separated by 182 nucleotides ABID97_RS04120 and ABID97_RS04125 are separated by 5 nucleotides ABID97_RS04125 and ABID97_RS04130 are separated by 53 nucleotides ABID97_RS04130 and ABID97_RS04135 are separated by 9 nucleotides
ABID97_RS04115: ABID97_RS04115 - RNA-binding protein, at 845,005 to 845,418
_RS04115
ABID97_RS04120: ABID97_RS04120 - DUF3820 family protein, at 845,601 to 845,834
_RS04120
ABID97_RS04125: ABID97_RS04125 - translation initiation factor Sui1, at 845,840 to 846,214
_RS04125
ABID97_RS04130: ABID97_RS04130 - DEAD/DEAH box helicase, at 846,268 to 847,545
_RS04130
ABID97_RS04135: ABID97_RS04135 - acyl-CoA dehydrogenase family protein, at 847,555 to 848,721
_RS04135
Position (kb) 846
847
848 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 845.370 kb on + strand, within ABID97_RS04115 at 845.384 kb on + strand at 845.398 kb on + strand at 845.398 kb on + strand at 845.398 kb on + strand at 845.399 kb on - strand at 845.399 kb on - strand at 845.399 kb on - strand at 845.402 kb on + strand at 845.403 kb on - strand at 845.403 kb on - strand at 845.403 kb on - strand at 845.431 kb on - strand at 845.446 kb on + strand at 845.446 kb on + strand at 845.446 kb on + strand at 845.447 kb on - strand at 845.447 kb on - strand at 845.447 kb on - strand at 845.447 kb on - strand at 845.447 kb on - strand at 845.447 kb on - strand at 845.447 kb on - strand at 845.519 kb on + strand at 845.519 kb on + strand at 845.599 kb on + strand at 845.670 kb on + strand, within ABID97_RS04120 at 845.671 kb on - strand, within ABID97_RS04120 at 845.671 kb on - strand, within ABID97_RS04120 at 846.174 kb on + strand, within ABID97_RS04125 at 846.175 kb on - strand, within ABID97_RS04125 at 846.175 kb on - strand, within ABID97_RS04125 at 846.175 kb on - strand, within ABID97_RS04125 at 846.329 kb on - strand at 847.063 kb on + strand, within ABID97_RS04130 at 847.063 kb on + strand, within ABID97_RS04130 at 847.078 kb on + strand, within ABID97_RS04130 at 847.078 kb on + strand, within ABID97_RS04130 at 847.078 kb on + strand, within ABID97_RS04130 at 847.078 kb on + strand, within ABID97_RS04130 at 847.079 kb on - strand, within ABID97_RS04130 at 847.225 kb on + strand, within ABID97_RS04130 at 847.225 kb on + strand, within ABID97_RS04130 at 847.225 kb on + strand, within ABID97_RS04130 at 847.226 kb on - strand, within ABID97_RS04130 at 847.252 kb on + strand, within ABID97_RS04130 at 847.252 kb on + strand, within ABID97_RS04130 at 847.253 kb on - strand, within ABID97_RS04130 at 847.253 kb on - strand, within ABID97_RS04130 at 847.253 kb on - strand, within ABID97_RS04130 at 847.641 kb on - strand at 848.276 kb on + strand, within ABID97_RS04135 at 848.276 kb on + strand, within ABID97_RS04135 at 848.276 kb on + strand, within ABID97_RS04135 at 848.277 kb on - strand, within ABID97_RS04135 at 848.277 kb on - strand, within ABID97_RS04135 at 848.277 kb on - strand, within ABID97_RS04135 at 848.525 kb on + strand, within ABID97_RS04135 at 848.526 kb on - strand, within ABID97_RS04135
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 845,370 + ABID97_RS04115 0.88 +2.2 845,384 + +1.4 845,398 + +2.7 845,398 + +1.8 845,398 + +1.7 845,399 - +2.1 845,399 - +1.9 845,399 - +1.2 845,402 + +1.7 845,403 - +2.1 845,403 - +1.0 845,403 - +1.9 845,431 - +1.6 845,446 + +2.0 845,446 + +1.3 845,446 + +2.4 845,447 - +1.4 845,447 - +1.2 845,447 - +1.4 845,447 - +1.7 845,447 - +0.9 845,447 - +1.4 845,447 - +1.8 845,519 + +2.0 845,519 + +2.4 845,599 + +1.4 845,670 + ABID97_RS04120 0.29 +1.5 845,671 - ABID97_RS04120 0.30 -0.5 845,671 - ABID97_RS04120 0.30 +1.1 846,174 + ABID97_RS04125 0.89 +1.4 846,175 - ABID97_RS04125 0.89 +1.2 846,175 - ABID97_RS04125 0.89 +0.3 846,175 - ABID97_RS04125 0.89 +1.3 846,329 - +1.0 847,063 + ABID97_RS04130 0.62 +0.9 847,063 + ABID97_RS04130 0.62 +1.6 847,078 + ABID97_RS04130 0.63 +3.1 847,078 + ABID97_RS04130 0.63 +0.0 847,078 + ABID97_RS04130 0.63 +0.6 847,078 + ABID97_RS04130 0.63 +0.2 847,079 - ABID97_RS04130 0.63 +0.2 847,225 + ABID97_RS04130 0.75 +0.9 847,225 + ABID97_RS04130 0.75 +1.5 847,225 + ABID97_RS04130 0.75 +0.9 847,226 - ABID97_RS04130 0.75 +0.3 847,252 + ABID97_RS04130 0.77 +1.7 847,252 + ABID97_RS04130 0.77 +0.1 847,253 - ABID97_RS04130 0.77 -0.7 847,253 - ABID97_RS04130 0.77 +0.8 847,253 - ABID97_RS04130 0.77 -1.1 847,641 - +0.3 848,276 + ABID97_RS04135 0.62 +1.3 848,276 + ABID97_RS04135 0.62 +0.8 848,276 + ABID97_RS04135 0.62 +0.7 848,277 - ABID97_RS04135 0.62 -0.0 848,277 - ABID97_RS04135 0.62 +0.3 848,277 - ABID97_RS04135 0.62 +0.4 848,525 + ABID97_RS04135 0.83 +0.4 848,526 - ABID97_RS04135 0.83 -1.8
Or see this region's nucleotide sequence