Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03420 and ABID97_RS03425 are separated by 24 nucleotides ABID97_RS03425 and ABID97_RS03430 are separated by 29 nucleotides ABID97_RS03430 and ABID97_RS03435 are separated by 22 nucleotides
ABID97_RS03420: ABID97_RS03420 - histidine ammonia-lyase, at 694,470 to 696,020
_RS03420
ABID97_RS03425: ABID97_RS03425 - urocanate hydratase, at 696,045 to 697,763
_RS03425
ABID97_RS03430: ABID97_RS03430 - HutD family protein, at 697,793 to 698,365
_RS03430
ABID97_RS03435: ABID97_RS03435 - imidazolonepropionase, at 698,388 to 699,614
_RS03435
Position (kb) 696
697
698 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 695.134 kb on + strand, within ABID97_RS03420 at 696.228 kb on + strand, within ABID97_RS03425 at 696.267 kb on + strand, within ABID97_RS03425 at 696.459 kb on + strand, within ABID97_RS03425 at 696.460 kb on - strand, within ABID97_RS03425 at 696.555 kb on + strand, within ABID97_RS03425 at 696.555 kb on + strand, within ABID97_RS03425 at 696.556 kb on - strand, within ABID97_RS03425 at 696.705 kb on + strand, within ABID97_RS03425 at 696.907 kb on - strand, within ABID97_RS03425 at 697.212 kb on + strand, within ABID97_RS03425 at 697.212 kb on + strand, within ABID97_RS03425 at 697.212 kb on + strand, within ABID97_RS03425 at 697.213 kb on - strand, within ABID97_RS03425 at 697.213 kb on - strand, within ABID97_RS03425 at 698.662 kb on - strand, within ABID97_RS03435 at 698.662 kb on - strand, within ABID97_RS03435 at 698.662 kb on - strand, within ABID97_RS03435
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 695,134 + ABID97_RS03420 0.43 -2.3 696,228 + ABID97_RS03425 0.11 -3.0 696,267 + ABID97_RS03425 0.13 -5.3 696,459 + ABID97_RS03425 0.24 -4.8 696,460 - ABID97_RS03425 0.24 -1.6 696,555 + ABID97_RS03425 0.30 -5.1 696,555 + ABID97_RS03425 0.30 -1.4 696,556 - ABID97_RS03425 0.30 -5.2 696,705 + ABID97_RS03425 0.38 -1.4 696,907 - ABID97_RS03425 0.50 -3.5 697,212 + ABID97_RS03425 0.68 -3.9 697,212 + ABID97_RS03425 0.68 -3.8 697,212 + ABID97_RS03425 0.68 -1.6 697,213 - ABID97_RS03425 0.68 -4.3 697,213 - ABID97_RS03425 0.68 -5.6 698,662 - ABID97_RS03435 0.22 -4.1 698,662 - ABID97_RS03435 0.22 -2.8 698,662 - ABID97_RS03435 0.22 -4.6
Or see this region's nucleotide sequence