Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03395 and ABID97_RS03400 are separated by 294 nucleotides ABID97_RS03400 and ABID97_RS03405 overlap by 20 nucleotides ABID97_RS03405 and ABID97_RS03410 overlap by 1 nucleotides
ABID97_RS03395: ABID97_RS03395 - DNA helicase RecQ, at 688,533 to 690,428
_RS03395
ABID97_RS03400: ABID97_RS03400 - ABC transporter substrate-binding protein, at 690,723 to 691,691
_RS03400
ABID97_RS03405: ABID97_RS03405 - ABC transporter permease, at 691,672 to 692,550
_RS03405
ABID97_RS03410: ABID97_RS03410 - ABC transporter ATP-binding protein, at 692,550 to 693,335
_RS03410
Position (kb) 690
691
692 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 689.746 kb on + strand, within ABID97_RS03395 at 689.747 kb on - strand, within ABID97_RS03395 at 689.747 kb on - strand, within ABID97_RS03395 at 689.747 kb on - strand, within ABID97_RS03395 at 690.044 kb on - strand, within ABID97_RS03395 at 690.245 kb on - strand at 690.553 kb on + strand at 690.619 kb on + strand at 690.623 kb on + strand at 691.054 kb on - strand, within ABID97_RS03400 at 691.149 kb on + strand, within ABID97_RS03400 at 691.275 kb on + strand, within ABID97_RS03400 at 691.275 kb on + strand, within ABID97_RS03400 at 691.275 kb on + strand, within ABID97_RS03400 at 691.276 kb on - strand, within ABID97_RS03400 at 691.276 kb on - strand, within ABID97_RS03400 at 691.276 kb on - strand, within ABID97_RS03400 at 691.690 kb on - strand at 691.690 kb on - strand at 691.690 kb on - strand at 692.099 kb on - strand, within ABID97_RS03405 at 692.365 kb on + strand, within ABID97_RS03405 at 692.365 kb on + strand, within ABID97_RS03405 at 692.365 kb on + strand, within ABID97_RS03405 at 692.365 kb on + strand, within ABID97_RS03405 at 692.366 kb on - strand, within ABID97_RS03405 at 692.366 kb on - strand, within ABID97_RS03405 at 692.439 kb on + strand, within ABID97_RS03405 at 692.440 kb on - strand, within ABID97_RS03405 at 692.440 kb on - strand, within ABID97_RS03405 at 692.440 kb on - strand, within ABID97_RS03405
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 689,746 + ABID97_RS03395 0.64 +0.7 689,747 - ABID97_RS03395 0.64 +0.9 689,747 - ABID97_RS03395 0.64 +0.7 689,747 - ABID97_RS03395 0.64 +1.2 690,044 - ABID97_RS03395 0.80 +2.5 690,245 - +1.1 690,553 + +3.4 690,619 + -3.1 690,623 + +0.3 691,054 - ABID97_RS03400 0.34 -3.6 691,149 + ABID97_RS03400 0.44 -4.4 691,275 + ABID97_RS03400 0.57 -4.9 691,275 + ABID97_RS03400 0.57 -0.5 691,275 + ABID97_RS03400 0.57 -3.9 691,276 - ABID97_RS03400 0.57 -3.2 691,276 - ABID97_RS03400 0.57 -1.2 691,276 - ABID97_RS03400 0.57 -4.4 691,690 - -5.0 691,690 - -2.6 691,690 - -1.6 692,099 - ABID97_RS03405 0.49 -2.5 692,365 + ABID97_RS03405 0.79 -3.9 692,365 + ABID97_RS03405 0.79 -3.4 692,365 + ABID97_RS03405 0.79 -3.6 692,365 + ABID97_RS03405 0.79 -1.5 692,366 - ABID97_RS03405 0.79 -6.2 692,366 - ABID97_RS03405 0.79 -4.9 692,439 + ABID97_RS03405 0.87 -3.5 692,440 - ABID97_RS03405 0.87 -4.2 692,440 - ABID97_RS03405 0.87 -5.1 692,440 - ABID97_RS03405 0.87 -4.2
Or see this region's nucleotide sequence