Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02625

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02615 and ABID97_RS02620 are separated by 32 nucleotidesABID97_RS02620 and ABID97_RS02625 overlap by 4 nucleotidesABID97_RS02625 and ABID97_RS02630 overlap by 1 nucleotides ABID97_RS02615: ABID97_RS02615 - SDR family oxidoreductase, at 534,330 to 535,112 _RS02615 ABID97_RS02620: ABID97_RS02620 - LPS export ABC transporter periplasmic protein LptC, at 535,145 to 535,789 _RS02620 ABID97_RS02625: ABID97_RS02625 - HAD hydrolase family protein, at 535,786 to 536,334 _RS02625 ABID97_RS02630: ABID97_RS02630 - KpsF/GutQ family sugar-phosphate isomerase, at 536,334 to 537,332 _RS02630 Position (kb) 535 536 537Strain fitness (log2 ratio) -1 0 1at 534.940 kb on + strand, within ABID97_RS02615at 534.940 kb on + strand, within ABID97_RS02615at 534.940 kb on + strand, within ABID97_RS02615at 534.941 kb on - strand, within ABID97_RS02615at 534.941 kb on - strand, within ABID97_RS02615at 535.039 kb on + strandat 535.040 kb on - strandat 535.040 kb on - strandat 535.040 kb on - strandat 535.826 kb on + strandat 535.827 kb on - strandat 535.827 kb on - strandat 535.901 kb on + strand, within ABID97_RS02625at 535.901 kb on + strand, within ABID97_RS02625at 535.901 kb on + strand, within ABID97_RS02625at 535.901 kb on + strand, within ABID97_RS02625at 535.901 kb on + strand, within ABID97_RS02625at 535.901 kb on + strand, within ABID97_RS02625at 535.901 kb on + strand, within ABID97_RS02625at 535.901 kb on + strand, within ABID97_RS02625at 535.901 kb on + strand, within ABID97_RS02625at 535.901 kb on + strand, within ABID97_RS02625at 535.901 kb on + strand, within ABID97_RS02625at 535.901 kb on + strand, within ABID97_RS02625at 535.901 kb on + strand, within ABID97_RS02625at 535.901 kb on + strand, within ABID97_RS02625at 535.902 kb on - strand, within ABID97_RS02625at 535.902 kb on - strand, within ABID97_RS02625at 535.902 kb on - strand, within ABID97_RS02625at 535.902 kb on - strand, within ABID97_RS02625at 535.902 kb on - strand, within ABID97_RS02625at 535.902 kb on - strand, within ABID97_RS02625at 535.902 kb on - strand, within ABID97_RS02625at 535.902 kb on - strand, within ABID97_RS02625

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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534,940 + ABID97_RS02615 0.78 -0.7
534,940 + ABID97_RS02615 0.78 +0.9
534,940 + ABID97_RS02615 0.78 +0.6
534,941 - ABID97_RS02615 0.78 +0.5
534,941 - ABID97_RS02615 0.78 +1.0
535,039 + +0.5
535,040 - +0.4
535,040 - -1.2
535,040 - +0.3
535,826 + +0.6
535,827 - +0.8
535,827 - -0.6
535,901 + ABID97_RS02625 0.21 -1.4
535,901 + ABID97_RS02625 0.21 +0.1
535,901 + ABID97_RS02625 0.21 -0.9
535,901 + ABID97_RS02625 0.21 -1.3
535,901 + ABID97_RS02625 0.21 -0.1
535,901 + ABID97_RS02625 0.21 +0.2
535,901 + ABID97_RS02625 0.21 +0.1
535,901 + ABID97_RS02625 0.21 -0.6
535,901 + ABID97_RS02625 0.21 +0.1
535,901 + ABID97_RS02625 0.21 -0.2
535,901 + ABID97_RS02625 0.21 -1.2
535,901 + ABID97_RS02625 0.21 +0.7
535,901 + ABID97_RS02625 0.21 -0.8
535,901 + ABID97_RS02625 0.21 +0.1
535,902 - ABID97_RS02625 0.21 -0.6
535,902 - ABID97_RS02625 0.21 +0.1
535,902 - ABID97_RS02625 0.21 -0.4
535,902 - ABID97_RS02625 0.21 -1.6
535,902 - ABID97_RS02625 0.21 +0.4
535,902 - ABID97_RS02625 0.21 -0.1
535,902 - ABID97_RS02625 0.21 +0.1
535,902 - ABID97_RS02625 0.21 +0.1

Or see this region's nucleotide sequence