Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01335 and ABID97_RS01340 are separated by 23 nucleotides ABID97_RS01340 and ABID97_RS01345 are separated by 47 nucleotides ABID97_RS01345 and ABID97_RS01350 are separated by 7 nucleotides
ABID97_RS01335: ABID97_RS01335 - flavin-dependent oxidoreductase, at 271,182 to 272,456
_RS01335
ABID97_RS01340: ABID97_RS01340 - RidA family protein, at 272,480 to 273,049
_RS01340
ABID97_RS01345: ABID97_RS01345 - coniferyl-alcohol dehydrogenase, at 273,097 to 273,900
_RS01345
ABID97_RS01350: ABID97_RS01350 - FAD-dependent oxidoreductase, at 273,908 to 275,296
_RS01350
Position (kb) 272
273
274 Strain fitness (log2 ratio) -1
0
1 at 271.939 kb on + strand, within ABID97_RS01335 at 272.449 kb on - strand at 272.589 kb on + strand, within ABID97_RS01340 at 272.590 kb on - strand, within ABID97_RS01340 at 272.664 kb on + strand, within ABID97_RS01340 at 272.767 kb on - strand, within ABID97_RS01340 at 273.318 kb on - strand, within ABID97_RS01345 at 273.419 kb on + strand, within ABID97_RS01345 at 273.420 kb on - strand, within ABID97_RS01345 at 273.913 kb on + strand at 273.913 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 271,939 + ABID97_RS01335 0.59 +0.2 272,449 - -0.0 272,589 + ABID97_RS01340 0.19 -0.4 272,590 - ABID97_RS01340 0.19 -0.4 272,664 + ABID97_RS01340 0.32 +0.0 272,767 - ABID97_RS01340 0.50 -0.5 273,318 - ABID97_RS01345 0.27 +0.2 273,419 + ABID97_RS01345 0.40 -0.2 273,420 - ABID97_RS01345 0.40 -1.1 273,913 + -1.0 273,913 + -0.1
Or see this region's nucleotide sequence