Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00075 and ABID97_RS00080 are separated by 88 nucleotides ABID97_RS00080 and ABID97_RS00085 are separated by 67 nucleotides ABID97_RS00085 and ABID97_RS00090 are separated by 60 nucleotides ABID97_RS00090 and ABID97_RS00095 are separated by 16 nucleotides
ABID97_RS00075: ABID97_RS00075 - DUF3108 domain-containing protein, at 16,608 to 17,813
_RS00075
ABID97_RS00080: ABID97_RS00080 - DUF3567 domain-containing protein, at 17,902 to 18,213
_RS00080
ABID97_RS00085: ABID97_RS00085 - AbrB family transcriptional regulator, at 18,281 to 19,342
_RS00085
ABID97_RS00090: ABID97_RS00090 - ChaN family lipoprotein, at 19,403 to 20,248
_RS00090
ABID97_RS00095: ABID97_RS00095 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 20,265 to 21,599
_RS00095
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 17.435 kb on + strand, within ABID97_RS00075 at 17.641 kb on - strand, within ABID97_RS00075 at 17.721 kb on + strand at 17.722 kb on - strand at 17.722 kb on - strand at 17.722 kb on - strand at 17.817 kb on + strand at 17.818 kb on - strand at 17.829 kb on + strand at 17.830 kb on - strand at 17.833 kb on + strand at 17.833 kb on + strand at 17.833 kb on + strand at 17.834 kb on - strand at 17.834 kb on - strand at 17.834 kb on - strand at 17.834 kb on - strand at 17.890 kb on + strand at 17.890 kb on + strand at 17.890 kb on + strand at 17.890 kb on + strand at 17.890 kb on + strand at 17.891 kb on - strand at 17.894 kb on + strand at 17.894 kb on + strand at 17.895 kb on - strand at 17.895 kb on - strand at 17.895 kb on - strand at 17.895 kb on - strand at 17.947 kb on + strand, within ABID97_RS00080 at 17.948 kb on - strand, within ABID97_RS00080 at 17.948 kb on - strand, within ABID97_RS00080 at 17.948 kb on - strand, within ABID97_RS00080 at 17.948 kb on - strand, within ABID97_RS00080 at 17.948 kb on - strand, within ABID97_RS00080 at 17.948 kb on - strand, within ABID97_RS00080 at 17.948 kb on - strand, within ABID97_RS00080 at 18.076 kb on + strand, within ABID97_RS00080 at 18.077 kb on - strand, within ABID97_RS00080 at 18.077 kb on - strand, within ABID97_RS00080 at 18.175 kb on + strand, within ABID97_RS00080 at 18.175 kb on + strand, within ABID97_RS00080 at 18.175 kb on + strand, within ABID97_RS00080 at 18.294 kb on + strand at 18.294 kb on + strand at 18.295 kb on - strand at 18.295 kb on - strand at 18.307 kb on - strand at 18.307 kb on - strand at 18.967 kb on - strand, within ABID97_RS00085 at 19.391 kb on + strand at 19.391 kb on + strand at 19.391 kb on + strand at 19.391 kb on + strand at 19.391 kb on + strand at 19.391 kb on + strand at 19.391 kb on + strand at 19.391 kb on + strand at 19.392 kb on - strand at 19.392 kb on - strand at 19.392 kb on - strand at 19.392 kb on - strand at 19.392 kb on - strand at 19.392 kb on - strand at 19.392 kb on - strand at 19.394 kb on + strand at 19.772 kb on + strand, within ABID97_RS00090 at 19.772 kb on + strand, within ABID97_RS00090 at 19.898 kb on + strand, within ABID97_RS00090 at 19.899 kb on - strand, within ABID97_RS00090 at 20.180 kb on + strand at 20.181 kb on - strand at 20.181 kb on - strand at 20.181 kb on - strand at 20.222 kb on + strand at 20.223 kb on - strand at 20.223 kb on - strand at 20.223 kb on - strand at 20.223 kb on - strand at 20.223 kb on - strand at 20.246 kb on + strand at 20.246 kb on + strand at 20.247 kb on - strand at 20.247 kb on - strand at 20.335 kb on + strand at 20.336 kb on - strand at 20.336 kb on - strand at 20.336 kb on - strand at 20.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 17,435 + ABID97_RS00075 0.69 +0.9 17,641 - ABID97_RS00075 0.86 +0.4 17,721 + +0.8 17,722 - +0.6 17,722 - +0.3 17,722 - +0.9 17,817 + +1.3 17,818 - +0.2 17,829 + +0.1 17,830 - +0.4 17,833 + +1.0 17,833 + +0.1 17,833 + +0.0 17,834 - +0.0 17,834 - -0.5 17,834 - +1.2 17,834 - -0.0 17,890 + -0.2 17,890 + -0.6 17,890 + +0.8 17,890 + +0.4 17,890 + -0.0 17,891 - +0.4 17,894 + +0.3 17,894 + -0.9 17,895 - +0.7 17,895 - -0.3 17,895 - -1.9 17,895 - -0.3 17,947 + ABID97_RS00080 0.14 -0.6 17,948 - ABID97_RS00080 0.15 -0.5 17,948 - ABID97_RS00080 0.15 -0.6 17,948 - ABID97_RS00080 0.15 +1.7 17,948 - ABID97_RS00080 0.15 +0.4 17,948 - ABID97_RS00080 0.15 -0.9 17,948 - ABID97_RS00080 0.15 -0.3 17,948 - ABID97_RS00080 0.15 -0.4 18,076 + ABID97_RS00080 0.56 +0.2 18,077 - ABID97_RS00080 0.56 -0.8 18,077 - ABID97_RS00080 0.56 -0.5 18,175 + ABID97_RS00080 0.88 +2.0 18,175 + ABID97_RS00080 0.88 -0.2 18,175 + ABID97_RS00080 0.88 +0.0 18,294 + +3.4 18,294 + +0.4 18,295 - +2.5 18,295 - +0.0 18,307 - -0.2 18,307 - +0.1 18,967 - ABID97_RS00085 0.65 +0.2 19,391 + +1.2 19,391 + +0.4 19,391 + +0.3 19,391 + +0.3 19,391 + +0.9 19,391 + +0.2 19,391 + -0.1 19,391 + +0.8 19,392 - +0.0 19,392 - -0.5 19,392 - +0.3 19,392 - -0.2 19,392 - +0.6 19,392 - +0.3 19,392 - +2.5 19,394 + +0.0 19,772 + ABID97_RS00090 0.44 +1.1 19,772 + ABID97_RS00090 0.44 +0.1 19,898 + ABID97_RS00090 0.59 +0.5 19,899 - ABID97_RS00090 0.59 -0.1 20,180 + +0.4 20,181 - +0.0 20,181 - +0.3 20,181 - -0.1 20,222 + +0.7 20,223 - +0.6 20,223 - -0.6 20,223 - -0.1 20,223 - +0.7 20,223 - +0.1 20,246 + +0.0 20,246 + +0.8 20,247 - +0.2 20,247 - -0.2 20,335 + +0.2 20,336 - +0.3 20,336 - +1.3 20,336 - +1.0 20,336 - +0.5
Or see this region's nucleotide sequence