Strain Fitness in Escherichia coli BW25113 around b0133

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyadD and panC are separated by 73 nucleotidespanC and panB are separated by 11 nucleotidespanB and yadC are separated by 113 nucleotides b0132: yadD - predicted transposase (NCBI), at 146,968 to 147,870 yadD b0133: panC - pantoate--beta-alanine ligase (NCBI), at 147,944 to 148,795 panC b0134: panB - 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI), at 148,807 to 149,601 panB b0135: yadC - predicted fimbrial-like adhesin protein (NCBI), at 149,715 to 150,953 yadC Position (kb) 147 148 149Strain fitness (log2 ratio) -2 -1 0 1at 146.964 kb on + strandat 146.979 kb on + strandat 146.979 kb on + strandat 146.982 kb on - strandat 146.985 kb on - strandat 147.127 kb on - strand, within yadDat 147.127 kb on - strand, within yadDat 147.127 kb on - strand, within yadDat 147.139 kb on - strand, within yadDat 147.154 kb on - strand, within yadDat 147.154 kb on - strand, within yadDat 147.164 kb on - strand, within yadDat 147.175 kb on - strand, within yadDat 147.268 kb on + strand, within yadDat 147.268 kb on + strand, within yadDat 147.278 kb on + strand, within yadDat 147.417 kb on - strand, within yadDat 147.436 kb on + strand, within yadDat 147.451 kb on - strand, within yadDat 147.466 kb on + strand, within yadDat 147.524 kb on + strand, within yadDat 147.524 kb on + strand, within yadDat 147.544 kb on - strand, within yadDat 147.558 kb on + strand, within yadDat 147.576 kb on - strand, within yadDat 147.631 kb on - strand, within yadDat 147.631 kb on - strand, within yadDat 147.663 kb on - strand, within yadDat 147.663 kb on - strand, within yadDat 147.665 kb on - strand, within yadDat 147.687 kb on - strand, within yadDat 147.696 kb on - strand, within yadDat 147.776 kb on + strand, within yadDat 147.806 kb on - strandat 147.806 kb on - strandat 147.820 kb on - strandat 147.820 kb on - strandat 147.901 kb on - strandat 147.954 kb on - strandat 147.984 kb on - strandat 147.984 kb on - strandat 147.999 kb on - strandat 148.026 kb on + strandat 148.042 kb on - strand, within panCat 148.042 kb on - strand, within panCat 148.063 kb on + strand, within panCat 148.063 kb on + strand, within panCat 148.202 kb on + strand, within panCat 148.205 kb on + strand, within panCat 148.205 kb on + strand, within panCat 148.215 kb on - strand, within panCat 148.215 kb on - strand, within panCat 148.236 kb on + strand, within panCat 148.259 kb on - strand, within panCat 148.376 kb on - strand, within panCat 148.376 kb on - strand, within panCat 148.385 kb on - strand, within panCat 148.463 kb on + strand, within panCat 148.484 kb on - strand, within panCat 148.488 kb on + strand, within panCat 148.547 kb on + strand, within panCat 148.570 kb on - strand, within panCat 148.570 kb on - strand, within panCat 148.573 kb on - strand, within panCat 148.624 kb on - strand, within panCat 148.624 kb on - strand, within panCat 148.643 kb on + strand, within panCat 148.787 kb on + strandat 148.787 kb on + strandat 149.073 kb on + strand, within panBat 149.079 kb on + strand, within panBat 149.112 kb on + strand, within panBat 149.197 kb on + strand, within panBat 149.197 kb on + strand, within panBat 149.282 kb on - strand, within panBat 149.295 kb on + strand, within panBat 149.297 kb on + strand, within panBat 149.391 kb on - strand, within panBat 149.416 kb on - strand, within panBat 149.438 kb on - strand, within panBat 149.438 kb on - strand, within panBat 149.475 kb on + strand, within panBat 149.518 kb on + strand, within panBat 149.524 kb on + strandat 149.524 kb on - strandat 149.524 kb on - strandat 149.532 kb on - strandat 149.597 kb on + strandat 149.653 kb on + strandat 149.662 kb on + strandat 149.667 kb on + strandat 149.667 kb on + strandat 149.677 kb on + strandat 149.677 kb on + strandat 149.680 kb on - strandat 149.693 kb on + strandat 149.693 kb on + strandat 149.693 kb on - strandat 149.693 kb on - strandat 149.694 kb on + strandat 149.696 kb on + strandat 149.701 kb on + strandat 149.701 kb on - strandat 149.704 kb on + strandat 149.718 kb on + strandat 149.718 kb on + strandat 149.718 kb on + strandat 149.718 kb on - strandat 149.737 kb on + strandat 149.737 kb on + strandat 149.737 kb on + strandat 149.755 kb on - strandat 149.756 kb on + strandat 149.762 kb on + strandat 149.775 kb on + strandat 149.775 kb on + strandat 149.778 kb on - strandat 149.786 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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146,964 + +0.3
146,979 + +0.1
146,979 + -0.5
146,982 - -0.9
146,985 - -0.1
147,127 - yadD b0132 0.18 -1.5
147,127 - yadD b0132 0.18 +1.7
147,127 - yadD b0132 0.18 -0.4
147,139 - yadD b0132 0.19 +0.5
147,154 - yadD b0132 0.21 +0.1
147,154 - yadD b0132 0.21 -0.4
147,164 - yadD b0132 0.22 -0.7
147,175 - yadD b0132 0.23 -0.8
147,268 + yadD b0132 0.33 +1.0
147,268 + yadD b0132 0.33 -0.1
147,278 + yadD b0132 0.34 +0.9
147,417 - yadD b0132 0.50 +0.5
147,436 + yadD b0132 0.52 +0.3
147,451 - yadD b0132 0.53 -0.6
147,466 + yadD b0132 0.55 +0.4
147,524 + yadD b0132 0.62 -0.0
147,524 + yadD b0132 0.62 -0.3
147,544 - yadD b0132 0.64 +0.3
147,558 + yadD b0132 0.65 +0.1
147,576 - yadD b0132 0.67 +0.5
147,631 - yadD b0132 0.73 +0.5
147,631 - yadD b0132 0.73 +0.5
147,663 - yadD b0132 0.77 +0.4
147,663 - yadD b0132 0.77 +1.1
147,665 - yadD b0132 0.77 -0.1
147,687 - yadD b0132 0.80 -0.5
147,696 - yadD b0132 0.81 +0.5
147,776 + yadD b0132 0.89 -0.5
147,806 - -0.5
147,806 - -0.6
147,820 - +0.9
147,820 - +0.1
147,901 - +0.0
147,954 - -0.6
147,984 - -1.3
147,984 - -1.3
147,999 - -1.1
148,026 + -1.6
148,042 - panC b0133 0.12 -1.1
148,042 - panC b0133 0.12 -1.6
148,063 + panC b0133 0.14 -2.6
148,063 + panC b0133 0.14 -1.6
148,202 + panC b0133 0.30 -1.2
148,205 + panC b0133 0.31 -2.1
148,205 + panC b0133 0.31 -2.6
148,215 - panC b0133 0.32 -1.0
148,215 - panC b0133 0.32 -2.3
148,236 + panC b0133 0.34 -1.4
148,259 - panC b0133 0.37 -0.9
148,376 - panC b0133 0.51 -1.9
148,376 - panC b0133 0.51 -0.9
148,385 - panC b0133 0.52 -1.5
148,463 + panC b0133 0.61 -1.7
148,484 - panC b0133 0.63 -1.5
148,488 + panC b0133 0.64 -2.7
148,547 + panC b0133 0.71 -1.2
148,570 - panC b0133 0.73 +0.4
148,570 - panC b0133 0.73 -1.6
148,573 - panC b0133 0.74 -1.1
148,624 - panC b0133 0.80 -1.4
148,624 - panC b0133 0.80 -1.9
148,643 + panC b0133 0.82 +0.5
148,787 + -0.6
148,787 + -1.3
149,073 + panB b0134 0.33 -1.1
149,079 + panB b0134 0.34 -0.1
149,112 + panB b0134 0.38 -1.6
149,197 + panB b0134 0.49 -1.3
149,197 + panB b0134 0.49 -1.2
149,282 - panB b0134 0.60 -1.2
149,295 + panB b0134 0.61 -1.6
149,297 + panB b0134 0.62 -2.6
149,391 - panB b0134 0.73 -1.4
149,416 - panB b0134 0.77 -1.1
149,438 - panB b0134 0.79 -0.6
149,438 - panB b0134 0.79 -1.9
149,475 + panB b0134 0.84 -1.6
149,518 + panB b0134 0.89 -0.0
149,524 + -1.1
149,524 - -1.0
149,524 - +0.1
149,532 - -1.0
149,597 + -0.9
149,653 + -0.3
149,662 + +0.8
149,667 + -0.2
149,667 + -0.2
149,677 + +0.2
149,677 + +0.7
149,680 - +0.2
149,693 + +0.2
149,693 + +0.4
149,693 - -0.7
149,693 - +0.3
149,694 + +0.0
149,696 + +0.4
149,701 + -0.2
149,701 - +0.3
149,704 + -0.0
149,718 + +0.9
149,718 + +0.5
149,718 + -0.7
149,718 - -0.2
149,737 + +0.3
149,737 + -0.1
149,737 + +0.3
149,755 - +0.4
149,756 + +0.1
149,762 + -0.1
149,775 + +0.2
149,775 + -0.1
149,778 - -0.8
149,786 + -0.8

Or see this region's nucleotide sequence