Strain Fitness in Serratia liquefaciens MT49 around IAI46_25160

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_25155 and IAI46_25160 are separated by 20 nucleotidesIAI46_25160 and IAI46_25165 are separated by 296 nucleotides IAI46_25155: IAI46_25155 - F0F1 ATP synthase subunit beta, at 5,370,458 to 5,371,840 _25155 IAI46_25160: IAI46_25160 - F0F1 ATP synthase subunit epsilon, at 5,371,861 to 5,372,280 _25160 IAI46_25165: IAI46_25165 - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 5,372,577 to 5,373,947 _25165 Position (kb) 5371 5372 5373Strain fitness (log2 ratio) -2 -1 0 1 2at 5371.838 kb on + strandat 5372.154 kb on + strand, within IAI46_25160at 5372.203 kb on + strand, within IAI46_25160at 5372.203 kb on + strand, within IAI46_25160at 5372.203 kb on + strand, within IAI46_25160at 5372.204 kb on - strand, within IAI46_25160at 5372.385 kb on + strandat 5372.385 kb on + strandat 5372.385 kb on + strandat 5372.385 kb on + strandat 5372.385 kb on + strandat 5372.385 kb on + strandat 5372.385 kb on + strandat 5372.385 kb on + strandat 5372.386 kb on - strandat 5372.386 kb on - strandat 5372.387 kb on + strandat 5372.388 kb on - strandat 5372.474 kb on - strandat 5372.512 kb on - strandat 5372.512 kb on - strandat 5372.518 kb on + strandat 5372.518 kb on + strandat 5372.521 kb on + strandat 5372.521 kb on + strandat 5372.540 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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5,371,838 + +0.9
5,372,154 + IAI46_25160 0.70 -0.4
5,372,203 + IAI46_25160 0.81 -0.2
5,372,203 + IAI46_25160 0.81 -2.5
5,372,203 + IAI46_25160 0.81 -0.1
5,372,204 - IAI46_25160 0.82 +0.2
5,372,385 + +0.3
5,372,385 + +0.4
5,372,385 + +0.4
5,372,385 + +0.4
5,372,385 + -0.1
5,372,385 + +0.2
5,372,385 + -0.7
5,372,385 + +2.1
5,372,386 - +0.8
5,372,386 - +0.2
5,372,387 + +1.2
5,372,388 - +0.7
5,372,474 - +0.8
5,372,512 - +1.6
5,372,512 - +0.0
5,372,518 + -0.6
5,372,518 + -0.4
5,372,521 + -0.1
5,372,521 + +0.3
5,372,540 + -0.3

Or see this region's nucleotide sequence