Strain Fitness in Serratia liquefaciens MT49 around IAI46_25055

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_25050 and IAI46_25055 are separated by 5 nucleotidesIAI46_25055 and IAI46_25060 are separated by 61 nucleotidesIAI46_25060 and IAI46_25065 are separated by 24 nucleotides IAI46_25050: IAI46_25050 - ribose operon transcriptional repressor RbsR, at 5,348,346 to 5,349,347 _25050 IAI46_25055: IAI46_25055 - ribokinase, at 5,349,353 to 5,350,279 _25055 IAI46_25060: IAI46_25060 - ribose ABC transporter substrate-binding protein RbsB, at 5,350,341 to 5,351,228 _25060 IAI46_25065: IAI46_25065 - ribose ABC transporter permease, at 5,351,253 to 5,352,218 _25065 Position (kb) 5349 5350 5351Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5348.392 kb on - strandat 5348.484 kb on - strand, within IAI46_25050at 5348.507 kb on - strand, within IAI46_25050at 5348.507 kb on - strand, within IAI46_25050at 5348.575 kb on + strand, within IAI46_25050at 5348.575 kb on + strand, within IAI46_25050at 5348.587 kb on + strand, within IAI46_25050at 5348.708 kb on - strand, within IAI46_25050at 5348.783 kb on + strand, within IAI46_25050at 5348.922 kb on + strand, within IAI46_25050at 5348.922 kb on + strand, within IAI46_25050at 5348.928 kb on + strand, within IAI46_25050at 5348.928 kb on + strand, within IAI46_25050at 5348.929 kb on - strand, within IAI46_25050at 5348.929 kb on - strand, within IAI46_25050at 5348.978 kb on + strand, within IAI46_25050at 5349.026 kb on + strand, within IAI46_25050at 5349.026 kb on + strand, within IAI46_25050at 5349.060 kb on - strand, within IAI46_25050at 5349.080 kb on - strand, within IAI46_25050at 5349.127 kb on + strand, within IAI46_25050at 5349.127 kb on + strand, within IAI46_25050at 5349.128 kb on - strand, within IAI46_25050at 5349.214 kb on + strand, within IAI46_25050at 5349.214 kb on + strand, within IAI46_25050at 5349.214 kb on + strand, within IAI46_25050at 5349.214 kb on + strand, within IAI46_25050at 5349.215 kb on - strand, within IAI46_25050at 5349.215 kb on - strand, within IAI46_25050at 5349.229 kb on - strand, within IAI46_25050at 5349.229 kb on - strand, within IAI46_25050at 5349.229 kb on - strand, within IAI46_25050at 5349.229 kb on - strand, within IAI46_25050at 5349.278 kb on + strandat 5349.279 kb on - strandat 5349.279 kb on - strandat 5349.279 kb on - strandat 5349.282 kb on - strandat 5349.282 kb on - strandat 5349.284 kb on + strandat 5349.354 kb on + strandat 5349.532 kb on + strand, within IAI46_25055at 5349.532 kb on + strand, within IAI46_25055at 5349.535 kb on + strand, within IAI46_25055at 5349.535 kb on + strand, within IAI46_25055at 5349.536 kb on - strand, within IAI46_25055at 5349.536 kb on - strand, within IAI46_25055at 5349.547 kb on + strand, within IAI46_25055at 5349.695 kb on - strand, within IAI46_25055at 5349.695 kb on - strand, within IAI46_25055at 5349.730 kb on + strand, within IAI46_25055at 5349.731 kb on - strand, within IAI46_25055at 5349.736 kb on + strand, within IAI46_25055at 5349.736 kb on + strand, within IAI46_25055at 5349.737 kb on - strand, within IAI46_25055at 5349.737 kb on - strand, within IAI46_25055at 5349.752 kb on + strand, within IAI46_25055at 5349.753 kb on - strand, within IAI46_25055at 5349.753 kb on - strand, within IAI46_25055at 5349.900 kb on + strand, within IAI46_25055at 5349.912 kb on + strand, within IAI46_25055at 5350.016 kb on - strand, within IAI46_25055at 5350.016 kb on - strand, within IAI46_25055at 5350.016 kb on - strand, within IAI46_25055at 5350.023 kb on - strand, within IAI46_25055at 5350.034 kb on - strand, within IAI46_25055at 5350.112 kb on - strand, within IAI46_25055at 5350.112 kb on - strand, within IAI46_25055at 5350.174 kb on + strand, within IAI46_25055at 5350.174 kb on + strand, within IAI46_25055at 5350.174 kb on + strand, within IAI46_25055at 5350.175 kb on - strand, within IAI46_25055at 5350.175 kb on - strand, within IAI46_25055at 5350.176 kb on + strand, within IAI46_25055at 5350.177 kb on - strand, within IAI46_25055at 5350.177 kb on - strand, within IAI46_25055at 5350.225 kb on + strandat 5350.225 kb on + strandat 5350.226 kb on - strandat 5350.226 kb on - strandat 5350.226 kb on - strandat 5350.231 kb on + strandat 5350.232 kb on - strandat 5350.246 kb on + strandat 5350.267 kb on + strandat 5350.267 kb on + strandat 5350.267 kb on + strandat 5350.267 kb on + strandat 5350.267 kb on + strandat 5350.268 kb on - strandat 5350.268 kb on - strandat 5350.268 kb on - strandat 5350.268 kb on - strandat 5350.268 kb on - strandat 5350.297 kb on + strandat 5350.298 kb on - strandat 5350.309 kb on + strandat 5350.309 kb on + strandat 5350.310 kb on - strandat 5350.310 kb on - strandat 5350.310 kb on - strandat 5350.336 kb on - strandat 5350.336 kb on - strandat 5350.342 kb on + strandat 5350.342 kb on + strandat 5350.343 kb on - strandat 5350.343 kb on - strandat 5350.377 kb on - strandat 5350.419 kb on + strandat 5350.420 kb on - strandat 5350.718 kb on + strand, within IAI46_25060at 5350.718 kb on + strand, within IAI46_25060at 5350.718 kb on + strand, within IAI46_25060at 5350.719 kb on - strand, within IAI46_25060at 5350.782 kb on - strand, within IAI46_25060at 5350.854 kb on - strand, within IAI46_25060at 5350.898 kb on + strand, within IAI46_25060at 5350.964 kb on + strand, within IAI46_25060at 5350.980 kb on - strand, within IAI46_25060at 5351.031 kb on - strand, within IAI46_25060at 5351.060 kb on - strand, within IAI46_25060at 5351.243 kb on + strandat 5351.243 kb on + strandat 5351.243 kb on + strandat 5351.244 kb on - strandat 5351.254 kb on + strandat 5351.255 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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5,348,392 - -0.3
5,348,484 - IAI46_25050 0.14 -1.0
5,348,507 - IAI46_25050 0.16 +0.5
5,348,507 - IAI46_25050 0.16 -0.3
5,348,575 + IAI46_25050 0.23 +0.3
5,348,575 + IAI46_25050 0.23 +0.1
5,348,587 + IAI46_25050 0.24 -0.6
5,348,708 - IAI46_25050 0.36 +0.4
5,348,783 + IAI46_25050 0.44 -0.5
5,348,922 + IAI46_25050 0.57 -0.7
5,348,922 + IAI46_25050 0.57 +0.2
5,348,928 + IAI46_25050 0.58 +1.8
5,348,928 + IAI46_25050 0.58 -0.9
5,348,929 - IAI46_25050 0.58 +0.8
5,348,929 - IAI46_25050 0.58 -2.4
5,348,978 + IAI46_25050 0.63 -0.8
5,349,026 + IAI46_25050 0.68 +0.9
5,349,026 + IAI46_25050 0.68 -0.6
5,349,060 - IAI46_25050 0.71 +1.5
5,349,080 - IAI46_25050 0.73 -0.3
5,349,127 + IAI46_25050 0.78 +0.1
5,349,127 + IAI46_25050 0.78 -0.4
5,349,128 - IAI46_25050 0.78 -0.2
5,349,214 + IAI46_25050 0.87 +0.2
5,349,214 + IAI46_25050 0.87 +0.5
5,349,214 + IAI46_25050 0.87 -0.4
5,349,214 + IAI46_25050 0.87 +0.9
5,349,215 - IAI46_25050 0.87 +0.7
5,349,215 - IAI46_25050 0.87 -1.0
5,349,229 - IAI46_25050 0.88 +0.7
5,349,229 - IAI46_25050 0.88 -0.4
5,349,229 - IAI46_25050 0.88 +1.3
5,349,229 - IAI46_25050 0.88 -0.2
5,349,278 + -0.1
5,349,279 - -0.2
5,349,279 - -1.2
5,349,279 - +1.2
5,349,282 - +0.4
5,349,282 - -0.9
5,349,284 + +0.6
5,349,354 + -1.9
5,349,532 + IAI46_25055 0.19 -0.7
5,349,532 + IAI46_25055 0.19 +0.5
5,349,535 + IAI46_25055 0.20 +1.1
5,349,535 + IAI46_25055 0.20 -1.1
5,349,536 - IAI46_25055 0.20 +0.2
5,349,536 - IAI46_25055 0.20 -0.3
5,349,547 + IAI46_25055 0.21 -0.1
5,349,695 - IAI46_25055 0.37 +0.2
5,349,695 - IAI46_25055 0.37 +0.3
5,349,730 + IAI46_25055 0.41 +0.3
5,349,731 - IAI46_25055 0.41 -0.1
5,349,736 + IAI46_25055 0.41 -0.2
5,349,736 + IAI46_25055 0.41 +0.1
5,349,737 - IAI46_25055 0.41 -0.3
5,349,737 - IAI46_25055 0.41 +0.4
5,349,752 + IAI46_25055 0.43 -0.7
5,349,753 - IAI46_25055 0.43 +0.2
5,349,753 - IAI46_25055 0.43 -0.2
5,349,900 + IAI46_25055 0.59 +1.2
5,349,912 + IAI46_25055 0.60 -0.1
5,350,016 - IAI46_25055 0.72 +0.5
5,350,016 - IAI46_25055 0.72 -0.1
5,350,016 - IAI46_25055 0.72 -0.4
5,350,023 - IAI46_25055 0.72 -0.6
5,350,034 - IAI46_25055 0.73 -0.2
5,350,112 - IAI46_25055 0.82 -0.5
5,350,112 - IAI46_25055 0.82 -0.1
5,350,174 + IAI46_25055 0.89 +0.2
5,350,174 + IAI46_25055 0.89 -1.3
5,350,174 + IAI46_25055 0.89 +1.1
5,350,175 - IAI46_25055 0.89 +1.2
5,350,175 - IAI46_25055 0.89 +0.6
5,350,176 + IAI46_25055 0.89 +0.5
5,350,177 - IAI46_25055 0.89 -0.1
5,350,177 - IAI46_25055 0.89 -0.0
5,350,225 + +0.1
5,350,225 + +0.0
5,350,226 - -0.5
5,350,226 - -0.1
5,350,226 - +0.5
5,350,231 + +0.8
5,350,232 - +0.4
5,350,246 + -2.8
5,350,267 + -1.6
5,350,267 + +0.3
5,350,267 + +0.5
5,350,267 + -0.5
5,350,267 + -0.5
5,350,268 - -0.0
5,350,268 - -0.4
5,350,268 - -0.6
5,350,268 - +0.1
5,350,268 - -0.6
5,350,297 + +0.2
5,350,298 - -0.2
5,350,309 + +1.3
5,350,309 + -0.2
5,350,310 - -0.0
5,350,310 - +0.6
5,350,310 - -0.9
5,350,336 - +0.5
5,350,336 - -0.3
5,350,342 + +0.3
5,350,342 + -0.1
5,350,343 - +0.1
5,350,343 - +0.2
5,350,377 - -0.5
5,350,419 + -0.0
5,350,420 - +0.1
5,350,718 + IAI46_25060 0.42 +0.3
5,350,718 + IAI46_25060 0.42 -0.5
5,350,718 + IAI46_25060 0.42 +1.5
5,350,719 - IAI46_25060 0.43 +0.6
5,350,782 - IAI46_25060 0.50 -1.1
5,350,854 - IAI46_25060 0.58 +0.1
5,350,898 + IAI46_25060 0.63 -0.7
5,350,964 + IAI46_25060 0.70 -0.9
5,350,980 - IAI46_25060 0.72 +0.7
5,351,031 - IAI46_25060 0.78 -0.5
5,351,060 - IAI46_25060 0.81 +2.1
5,351,243 + +0.3
5,351,243 + -0.6
5,351,243 + -0.3
5,351,244 - +0.4
5,351,254 + -1.0
5,351,255 - +0.0

Or see this region's nucleotide sequence