Strain Fitness in Serratia liquefaciens MT49 around IAI46_24765

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24755 and IAI46_24760 are separated by 4 nucleotidesIAI46_24760 and IAI46_24765 are separated by 1 nucleotidesIAI46_24765 and IAI46_24770 are separated by 1 nucleotides IAI46_24755: IAI46_24755 - O-antigen ligase family protein, at 5,283,833 to 5,285,071 _24755 IAI46_24760: IAI46_24760 - glycosyltransferase, at 5,285,076 to 5,286,059 _24760 IAI46_24765: IAI46_24765 - glycosyltransferase family 9 protein, at 5,286,061 to 5,287,158 _24765 IAI46_24770: IAI46_24770 - polysaccharide deacetylase family protein, at 5,287,160 to 5,288,116 _24770 Position (kb) 5286 5287 5288Strain fitness (log2 ratio) -2 -1 0 1at 5285.069 kb on + strandat 5285.070 kb on - strandat 5285.276 kb on + strand, within IAI46_24760at 5285.277 kb on - strand, within IAI46_24760at 5285.277 kb on - strand, within IAI46_24760at 5285.343 kb on + strand, within IAI46_24760at 5285.441 kb on + strand, within IAI46_24760at 5285.509 kb on - strand, within IAI46_24760at 5285.549 kb on - strand, within IAI46_24760at 5285.586 kb on + strand, within IAI46_24760at 5285.706 kb on + strand, within IAI46_24760at 5285.706 kb on + strand, within IAI46_24760at 5285.707 kb on - strand, within IAI46_24760at 5285.707 kb on - strand, within IAI46_24760at 5285.721 kb on - strand, within IAI46_24760at 5285.760 kb on - strand, within IAI46_24760at 5285.899 kb on - strand, within IAI46_24760at 5285.905 kb on - strand, within IAI46_24760at 5285.908 kb on - strand, within IAI46_24760at 5285.908 kb on - strand, within IAI46_24760at 5285.908 kb on - strand, within IAI46_24760at 5285.908 kb on - strand, within IAI46_24760at 5285.908 kb on - strand, within IAI46_24760at 5285.908 kb on - strand, within IAI46_24760at 5285.914 kb on - strand, within IAI46_24760at 5285.914 kb on - strand, within IAI46_24760at 5285.929 kb on + strand, within IAI46_24760at 5285.930 kb on - strand, within IAI46_24760at 5285.933 kb on + strand, within IAI46_24760at 5285.933 kb on + strand, within IAI46_24760at 5285.933 kb on + strand, within IAI46_24760at 5285.934 kb on - strand, within IAI46_24760at 5285.934 kb on - strand, within IAI46_24760at 5286.070 kb on - strandat 5286.101 kb on + strandat 5286.102 kb on - strandat 5286.105 kb on + strandat 5286.105 kb on + strandat 5286.106 kb on - strandat 5286.106 kb on - strandat 5286.153 kb on + strandat 5286.153 kb on + strandat 5286.153 kb on + strandat 5286.153 kb on + strandat 5286.153 kb on + strandat 5286.153 kb on + strandat 5286.154 kb on - strandat 5286.154 kb on - strandat 5286.154 kb on - strandat 5286.156 kb on + strandat 5286.156 kb on + strandat 5286.156 kb on + strandat 5286.156 kb on + strandat 5286.156 kb on + strandat 5286.156 kb on + strandat 5286.157 kb on - strandat 5286.157 kb on - strandat 5286.157 kb on - strandat 5286.157 kb on - strandat 5286.157 kb on - strandat 5286.157 kb on - strandat 5286.157 kb on - strandat 5286.157 kb on - strandat 5286.158 kb on + strandat 5286.158 kb on + strandat 5286.370 kb on + strand, within IAI46_24765at 5286.371 kb on - strand, within IAI46_24765at 5286.448 kb on + strand, within IAI46_24765at 5286.449 kb on - strand, within IAI46_24765at 5286.449 kb on - strand, within IAI46_24765at 5286.553 kb on + strand, within IAI46_24765at 5286.554 kb on - strand, within IAI46_24765at 5286.558 kb on + strand, within IAI46_24765at 5286.559 kb on - strand, within IAI46_24765at 5286.559 kb on - strand, within IAI46_24765at 5286.559 kb on - strand, within IAI46_24765at 5286.559 kb on - strand, within IAI46_24765at 5286.666 kb on + strand, within IAI46_24765at 5286.666 kb on + strand, within IAI46_24765at 5286.667 kb on - strand, within IAI46_24765at 5286.678 kb on - strand, within IAI46_24765at 5286.678 kb on - strand, within IAI46_24765at 5286.678 kb on - strand, within IAI46_24765at 5286.678 kb on - strand, within IAI46_24765at 5286.680 kb on + strand, within IAI46_24765at 5286.691 kb on - strand, within IAI46_24765at 5286.691 kb on - strand, within IAI46_24765at 5286.691 kb on - strand, within IAI46_24765at 5286.692 kb on + strand, within IAI46_24765at 5286.692 kb on + strand, within IAI46_24765at 5286.692 kb on + strand, within IAI46_24765at 5286.692 kb on + strand, within IAI46_24765at 5286.692 kb on + strand, within IAI46_24765at 5286.692 kb on + strand, within IAI46_24765at 5286.693 kb on - strand, within IAI46_24765at 5286.693 kb on - strand, within IAI46_24765at 5286.693 kb on - strand, within IAI46_24765at 5286.693 kb on - strand, within IAI46_24765at 5286.734 kb on + strand, within IAI46_24765at 5286.735 kb on - strand, within IAI46_24765at 5286.735 kb on - strand, within IAI46_24765at 5286.735 kb on - strand, within IAI46_24765at 5286.735 kb on - strand, within IAI46_24765at 5286.735 kb on - strand, within IAI46_24765at 5286.747 kb on + strand, within IAI46_24765at 5286.752 kb on + strand, within IAI46_24765at 5286.752 kb on + strand, within IAI46_24765at 5286.752 kb on + strand, within IAI46_24765at 5286.781 kb on - strand, within IAI46_24765at 5286.902 kb on + strand, within IAI46_24765at 5286.902 kb on + strand, within IAI46_24765at 5286.902 kb on + strand, within IAI46_24765at 5286.903 kb on - strand, within IAI46_24765at 5286.903 kb on - strand, within IAI46_24765at 5286.951 kb on + strand, within IAI46_24765at 5286.951 kb on + strand, within IAI46_24765at 5286.952 kb on - strand, within IAI46_24765at 5286.954 kb on + strand, within IAI46_24765at 5286.954 kb on + strand, within IAI46_24765at 5286.955 kb on - strand, within IAI46_24765at 5286.955 kb on - strand, within IAI46_24765at 5286.955 kb on - strand, within IAI46_24765at 5286.955 kb on - strand, within IAI46_24765at 5286.955 kb on - strand, within IAI46_24765at 5286.955 kb on - strand, within IAI46_24765at 5287.002 kb on + strand, within IAI46_24765at 5287.003 kb on - strand, within IAI46_24765at 5287.008 kb on + strand, within IAI46_24765at 5287.008 kb on + strand, within IAI46_24765at 5287.009 kb on - strand, within IAI46_24765at 5287.009 kb on - strand, within IAI46_24765at 5287.009 kb on - strand, within IAI46_24765at 5287.009 kb on - strand, within IAI46_24765at 5287.010 kb on - strand, within IAI46_24765at 5287.034 kb on + strand, within IAI46_24765at 5287.035 kb on - strand, within IAI46_24765at 5287.045 kb on - strand, within IAI46_24765at 5287.107 kb on + strandat 5287.108 kb on - strandat 5287.108 kb on - strandat 5287.110 kb on - strandat 5287.172 kb on - strandat 5287.207 kb on + strandat 5287.207 kb on + strandat 5287.238 kb on + strandat 5287.239 kb on - strandat 5287.450 kb on - strand, within IAI46_24770at 5287.465 kb on + strand, within IAI46_24770at 5287.466 kb on - strand, within IAI46_24770at 5287.486 kb on + strand, within IAI46_24770at 5287.486 kb on + strand, within IAI46_24770at 5287.488 kb on + strand, within IAI46_24770at 5287.489 kb on - strand, within IAI46_24770at 5287.623 kb on + strand, within IAI46_24770at 5287.624 kb on - strand, within IAI46_24770at 5287.665 kb on + strand, within IAI46_24770at 5287.671 kb on + strand, within IAI46_24770at 5287.672 kb on - strand, within IAI46_24770at 5287.672 kb on - strand, within IAI46_24770at 5287.692 kb on + strand, within IAI46_24770at 5287.692 kb on + strand, within IAI46_24770at 5287.693 kb on - strand, within IAI46_24770at 5287.693 kb on - strand, within IAI46_24770at 5287.693 kb on - strand, within IAI46_24770at 5287.693 kb on - strand, within IAI46_24770at 5287.693 kb on - strand, within IAI46_24770at 5287.695 kb on + strand, within IAI46_24770at 5287.695 kb on + strand, within IAI46_24770at 5287.807 kb on - strand, within IAI46_24770at 5287.939 kb on - strand, within IAI46_24770at 5287.962 kb on + strand, within IAI46_24770at 5287.963 kb on - strand, within IAI46_24770at 5287.963 kb on - strand, within IAI46_24770at 5287.984 kb on + strand, within IAI46_24770at 5287.993 kb on - strand, within IAI46_24770at 5288.117 kb on - strandat 5288.132 kb on + strandat 5288.133 kb on - strandat 5288.133 kb on - strandat 5288.133 kb on - strandat 5288.149 kb on - strandat 5288.154 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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5,285,069 + +0.0
5,285,070 - +0.5
5,285,276 + IAI46_24760 0.20 -2.7
5,285,277 - IAI46_24760 0.20 -0.5
5,285,277 - IAI46_24760 0.20 -0.3
5,285,343 + IAI46_24760 0.27 -1.0
5,285,441 + IAI46_24760 0.37 +0.2
5,285,509 - IAI46_24760 0.44 -1.0
5,285,549 - IAI46_24760 0.48 +0.2
5,285,586 + IAI46_24760 0.52 -0.5
5,285,706 + IAI46_24760 0.64 -0.5
5,285,706 + IAI46_24760 0.64 +1.1
5,285,707 - IAI46_24760 0.64 -0.5
5,285,707 - IAI46_24760 0.64 -0.8
5,285,721 - IAI46_24760 0.66 -1.1
5,285,760 - IAI46_24760 0.70 -1.1
5,285,899 - IAI46_24760 0.84 -0.7
5,285,905 - IAI46_24760 0.84 +0.2
5,285,908 - IAI46_24760 0.85 +0.5
5,285,908 - IAI46_24760 0.85 +0.5
5,285,908 - IAI46_24760 0.85 -2.1
5,285,908 - IAI46_24760 0.85 +0.2
5,285,908 - IAI46_24760 0.85 +0.2
5,285,908 - IAI46_24760 0.85 +0.5
5,285,914 - IAI46_24760 0.85 -0.1
5,285,914 - IAI46_24760 0.85 -1.7
5,285,929 + IAI46_24760 0.87 +0.2
5,285,930 - IAI46_24760 0.87 -1.4
5,285,933 + IAI46_24760 0.87 +0.9
5,285,933 + IAI46_24760 0.87 -1.2
5,285,933 + IAI46_24760 0.87 -0.6
5,285,934 - IAI46_24760 0.87 -0.8
5,285,934 - IAI46_24760 0.87 -0.5
5,286,070 - +0.8
5,286,101 + -0.5
5,286,102 - -0.8
5,286,105 + -0.9
5,286,105 + +1.6
5,286,106 - -0.2
5,286,106 - +0.1
5,286,153 + -0.4
5,286,153 + +0.1
5,286,153 + -0.1
5,286,153 + +0.4
5,286,153 + -0.7
5,286,153 + +0.1
5,286,154 - +0.6
5,286,154 - +0.1
5,286,154 - +0.5
5,286,156 + +0.4
5,286,156 + +0.1
5,286,156 + +0.4
5,286,156 + +0.1
5,286,156 + -0.2
5,286,156 + +0.2
5,286,157 - +0.2
5,286,157 - -0.6
5,286,157 - +0.3
5,286,157 - +0.5
5,286,157 - +0.3
5,286,157 - -1.5
5,286,157 - -0.1
5,286,157 - +1.4
5,286,158 + +0.0
5,286,158 + -0.1
5,286,370 + IAI46_24765 0.28 +0.0
5,286,371 - IAI46_24765 0.28 +0.3
5,286,448 + IAI46_24765 0.35 +0.5
5,286,449 - IAI46_24765 0.35 -0.9
5,286,449 - IAI46_24765 0.35 +0.1
5,286,553 + IAI46_24765 0.45 +0.3
5,286,554 - IAI46_24765 0.45 -0.0
5,286,558 + IAI46_24765 0.45 -0.0
5,286,559 - IAI46_24765 0.45 +1.2
5,286,559 - IAI46_24765 0.45 -0.3
5,286,559 - IAI46_24765 0.45 -1.7
5,286,559 - IAI46_24765 0.45 -2.3
5,286,666 + IAI46_24765 0.55 -0.0
5,286,666 + IAI46_24765 0.55 +0.6
5,286,667 - IAI46_24765 0.55 -0.4
5,286,678 - IAI46_24765 0.56 -0.6
5,286,678 - IAI46_24765 0.56 +0.4
5,286,678 - IAI46_24765 0.56 +0.1
5,286,678 - IAI46_24765 0.56 +0.4
5,286,680 + IAI46_24765 0.56 -0.2
5,286,691 - IAI46_24765 0.57 -0.4
5,286,691 - IAI46_24765 0.57 -1.0
5,286,691 - IAI46_24765 0.57 +0.2
5,286,692 + IAI46_24765 0.57 +0.0
5,286,692 + IAI46_24765 0.57 -0.3
5,286,692 + IAI46_24765 0.57 +0.5
5,286,692 + IAI46_24765 0.57 +1.5
5,286,692 + IAI46_24765 0.57 -0.1
5,286,692 + IAI46_24765 0.57 -0.7
5,286,693 - IAI46_24765 0.58 -1.5
5,286,693 - IAI46_24765 0.58 +0.5
5,286,693 - IAI46_24765 0.58 +1.2
5,286,693 - IAI46_24765 0.58 +0.3
5,286,734 + IAI46_24765 0.61 +0.2
5,286,735 - IAI46_24765 0.61 +0.6
5,286,735 - IAI46_24765 0.61 +0.5
5,286,735 - IAI46_24765 0.61 +0.5
5,286,735 - IAI46_24765 0.61 -0.2
5,286,735 - IAI46_24765 0.61 +0.1
5,286,747 + IAI46_24765 0.62 +0.2
5,286,752 + IAI46_24765 0.63 -0.6
5,286,752 + IAI46_24765 0.63 +0.1
5,286,752 + IAI46_24765 0.63 -0.0
5,286,781 - IAI46_24765 0.66 +0.4
5,286,902 + IAI46_24765 0.77 -0.3
5,286,902 + IAI46_24765 0.77 +0.1
5,286,902 + IAI46_24765 0.77 +0.0
5,286,903 - IAI46_24765 0.77 +0.6
5,286,903 - IAI46_24765 0.77 +0.5
5,286,951 + IAI46_24765 0.81 +1.0
5,286,951 + IAI46_24765 0.81 +1.4
5,286,952 - IAI46_24765 0.81 +0.4
5,286,954 + IAI46_24765 0.81 -0.1
5,286,954 + IAI46_24765 0.81 -0.4
5,286,955 - IAI46_24765 0.81 +0.4
5,286,955 - IAI46_24765 0.81 -0.9
5,286,955 - IAI46_24765 0.81 -0.4
5,286,955 - IAI46_24765 0.81 +0.5
5,286,955 - IAI46_24765 0.81 -0.4
5,286,955 - IAI46_24765 0.81 -1.0
5,287,002 + IAI46_24765 0.86 -1.0
5,287,003 - IAI46_24765 0.86 -1.3
5,287,008 + IAI46_24765 0.86 +0.3
5,287,008 + IAI46_24765 0.86 +0.9
5,287,009 - IAI46_24765 0.86 -0.1
5,287,009 - IAI46_24765 0.86 +1.0
5,287,009 - IAI46_24765 0.86 +0.2
5,287,009 - IAI46_24765 0.86 +0.6
5,287,010 - IAI46_24765 0.86 +0.4
5,287,034 + IAI46_24765 0.89 -0.9
5,287,035 - IAI46_24765 0.89 +0.5
5,287,045 - IAI46_24765 0.90 +0.4
5,287,107 + -0.1
5,287,108 - -0.3
5,287,108 - +0.1
5,287,110 - -0.2
5,287,172 - +1.0
5,287,207 + -0.3
5,287,207 + -0.3
5,287,238 + +0.2
5,287,239 - -1.1
5,287,450 - IAI46_24770 0.30 +1.2
5,287,465 + IAI46_24770 0.32 -0.3
5,287,466 - IAI46_24770 0.32 -0.8
5,287,486 + IAI46_24770 0.34 +0.5
5,287,486 + IAI46_24770 0.34 -0.7
5,287,488 + IAI46_24770 0.34 -0.8
5,287,489 - IAI46_24770 0.34 -0.8
5,287,623 + IAI46_24770 0.48 -0.7
5,287,624 - IAI46_24770 0.48 -0.3
5,287,665 + IAI46_24770 0.53 -1.9
5,287,671 + IAI46_24770 0.53 +0.2
5,287,672 - IAI46_24770 0.54 +0.5
5,287,672 - IAI46_24770 0.54 -1.6
5,287,692 + IAI46_24770 0.56 -1.3
5,287,692 + IAI46_24770 0.56 +0.5
5,287,693 - IAI46_24770 0.56 -0.5
5,287,693 - IAI46_24770 0.56 -0.8
5,287,693 - IAI46_24770 0.56 -1.1
5,287,693 - IAI46_24770 0.56 -0.3
5,287,693 - IAI46_24770 0.56 -2.1
5,287,695 + IAI46_24770 0.56 -1.6
5,287,695 + IAI46_24770 0.56 +0.2
5,287,807 - IAI46_24770 0.68 -0.5
5,287,939 - IAI46_24770 0.81 -1.4
5,287,962 + IAI46_24770 0.84 +0.5
5,287,963 - IAI46_24770 0.84 +0.5
5,287,963 - IAI46_24770 0.84 -0.7
5,287,984 + IAI46_24770 0.86 -0.1
5,287,993 - IAI46_24770 0.87 +0.2
5,288,117 - +0.8
5,288,132 + +1.3
5,288,133 - -1.8
5,288,133 - -0.1
5,288,133 - -0.4
5,288,149 - +0.8
5,288,154 - +0.1

Or see this region's nucleotide sequence