Strain Fitness in Serratia liquefaciens MT49 around IAI46_23760

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23750 and IAI46_23755 are separated by 96 nucleotidesIAI46_23755 and IAI46_23760 overlap by 4 nucleotidesIAI46_23760 and IAI46_23765 are separated by 25 nucleotides IAI46_23750: IAI46_23750 - intracellular growth attenuator family protein, at 5,050,208 to 5,052,340 _23750 IAI46_23755: IAI46_23755 - GMP/IMP nucleotidase, at 5,052,437 to 5,053,117 _23755 IAI46_23760: IAI46_23760 - ribosome-associated heat shock protein Hsp15, at 5,053,114 to 5,053,521 _23760 IAI46_23765: IAI46_23765 - Hsp33 family molecular chaperone HslO, at 5,053,547 to 5,054,425 _23765 Position (kb) 5053 5054Strain fitness (log2 ratio) -3 -2 -1 0 1at 5052.373 kb on + strandat 5052.374 kb on - strandat 5052.374 kb on - strandat 5052.378 kb on + strandat 5052.378 kb on + strandat 5052.378 kb on + strandat 5052.378 kb on + strandat 5052.379 kb on - strandat 5052.379 kb on - strandat 5052.379 kb on - strandat 5052.379 kb on - strandat 5052.390 kb on - strandat 5052.390 kb on - strandat 5052.485 kb on - strandat 5052.568 kb on + strand, within IAI46_23755at 5052.569 kb on - strand, within IAI46_23755at 5052.569 kb on - strand, within IAI46_23755at 5052.608 kb on + strand, within IAI46_23755at 5052.609 kb on - strand, within IAI46_23755at 5052.609 kb on - strand, within IAI46_23755at 5052.638 kb on + strand, within IAI46_23755at 5052.638 kb on + strand, within IAI46_23755at 5052.639 kb on - strand, within IAI46_23755at 5052.677 kb on - strand, within IAI46_23755at 5052.681 kb on - strand, within IAI46_23755at 5052.823 kb on + strand, within IAI46_23755at 5052.850 kb on - strand, within IAI46_23755at 5052.967 kb on + strand, within IAI46_23755at 5052.968 kb on - strand, within IAI46_23755at 5053.077 kb on - strandat 5053.122 kb on + strandat 5053.122 kb on + strandat 5053.155 kb on + strand, within IAI46_23760at 5053.155 kb on + strand, within IAI46_23760at 5053.231 kb on + strand, within IAI46_23760at 5053.231 kb on + strand, within IAI46_23760at 5053.231 kb on + strand, within IAI46_23760at 5053.231 kb on + strand, within IAI46_23760at 5053.231 kb on + strand, within IAI46_23760at 5053.232 kb on - strand, within IAI46_23760at 5053.232 kb on - strand, within IAI46_23760at 5053.232 kb on - strand, within IAI46_23760at 5053.233 kb on + strand, within IAI46_23760at 5053.234 kb on - strand, within IAI46_23760at 5053.248 kb on + strand, within IAI46_23760at 5053.373 kb on - strand, within IAI46_23760at 5053.494 kb on + strandat 5053.546 kb on + strandat 5053.546 kb on + strandat 5053.546 kb on + strandat 5053.629 kb on - strandat 5053.629 kb on - strandat 5053.738 kb on + strand, within IAI46_23765at 5053.746 kb on + strand, within IAI46_23765at 5053.747 kb on - strand, within IAI46_23765at 5053.752 kb on + strand, within IAI46_23765at 5053.752 kb on + strand, within IAI46_23765at 5053.753 kb on - strand, within IAI46_23765at 5053.753 kb on - strand, within IAI46_23765at 5053.786 kb on + strand, within IAI46_23765at 5053.828 kb on - strand, within IAI46_23765at 5053.920 kb on - strand, within IAI46_23765at 5053.929 kb on + strand, within IAI46_23765at 5053.973 kb on + strand, within IAI46_23765at 5054.054 kb on - strand, within IAI46_23765at 5054.174 kb on + strand, within IAI46_23765at 5054.175 kb on - strand, within IAI46_23765at 5054.236 kb on + strand, within IAI46_23765at 5054.326 kb on + strand, within IAI46_23765at 5054.340 kb on - strandat 5054.340 kb on - strandat 5054.340 kb on - strandat 5054.354 kb on + strandat 5054.354 kb on + strandat 5054.355 kb on - strandat 5054.355 kb on - strandat 5054.355 kb on - strandat 5054.387 kb on + strandat 5054.388 kb on - strandat 5054.395 kb on + strandat 5054.395 kb on + strandat 5054.423 kb on + strandat 5054.424 kb on - strandat 5054.424 kb on - strandat 5054.427 kb on + strandat 5054.428 kb on - strandat 5054.428 kb on - strandat 5054.428 kb on - strandat 5054.502 kb on + strandat 5054.502 kb on + strandat 5054.503 kb on - strandat 5054.503 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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5,052,373 + -1.0
5,052,374 - +0.6
5,052,374 - +0.7
5,052,378 + -0.0
5,052,378 + +0.8
5,052,378 + +1.2
5,052,378 + +0.2
5,052,379 - -0.5
5,052,379 - +0.2
5,052,379 - +0.4
5,052,379 - +0.6
5,052,390 - +0.9
5,052,390 - +0.1
5,052,485 - -0.8
5,052,568 + IAI46_23755 0.19 -0.1
5,052,569 - IAI46_23755 0.19 -2.3
5,052,569 - IAI46_23755 0.19 -1.2
5,052,608 + IAI46_23755 0.25 +0.2
5,052,609 - IAI46_23755 0.25 +1.0
5,052,609 - IAI46_23755 0.25 -0.7
5,052,638 + IAI46_23755 0.30 -1.2
5,052,638 + IAI46_23755 0.30 +0.3
5,052,639 - IAI46_23755 0.30 +0.5
5,052,677 - IAI46_23755 0.35 +1.1
5,052,681 - IAI46_23755 0.36 +1.0
5,052,823 + IAI46_23755 0.57 +0.1
5,052,850 - IAI46_23755 0.61 +1.4
5,052,967 + IAI46_23755 0.78 +0.4
5,052,968 - IAI46_23755 0.78 -0.7
5,053,077 - +0.9
5,053,122 + +0.8
5,053,122 + -2.2
5,053,155 + IAI46_23760 0.10 -0.3
5,053,155 + IAI46_23760 0.10 +0.6
5,053,231 + IAI46_23760 0.29 +0.6
5,053,231 + IAI46_23760 0.29 +0.8
5,053,231 + IAI46_23760 0.29 +0.8
5,053,231 + IAI46_23760 0.29 +0.1
5,053,231 + IAI46_23760 0.29 +0.4
5,053,232 - IAI46_23760 0.29 +1.4
5,053,232 - IAI46_23760 0.29 -0.1
5,053,232 - IAI46_23760 0.29 +1.1
5,053,233 + IAI46_23760 0.29 +0.6
5,053,234 - IAI46_23760 0.29 -1.1
5,053,248 + IAI46_23760 0.33 +1.1
5,053,373 - IAI46_23760 0.63 -0.4
5,053,494 + +0.2
5,053,546 + +0.1
5,053,546 + -0.2
5,053,546 + -0.1
5,053,629 - +0.1
5,053,629 - +0.3
5,053,738 + IAI46_23765 0.22 +0.6
5,053,746 + IAI46_23765 0.23 +0.1
5,053,747 - IAI46_23765 0.23 +1.2
5,053,752 + IAI46_23765 0.23 +0.8
5,053,752 + IAI46_23765 0.23 -0.3
5,053,753 - IAI46_23765 0.23 -2.1
5,053,753 - IAI46_23765 0.23 +0.4
5,053,786 + IAI46_23765 0.27 +0.3
5,053,828 - IAI46_23765 0.32 -0.1
5,053,920 - IAI46_23765 0.42 +0.4
5,053,929 + IAI46_23765 0.43 +0.4
5,053,973 + IAI46_23765 0.48 +1.1
5,054,054 - IAI46_23765 0.58 +1.2
5,054,174 + IAI46_23765 0.71 +1.4
5,054,175 - IAI46_23765 0.71 +0.4
5,054,236 + IAI46_23765 0.78 -1.1
5,054,326 + IAI46_23765 0.89 -0.4
5,054,340 - -0.4
5,054,340 - -0.8
5,054,340 - +0.4
5,054,354 + -0.1
5,054,354 + +0.4
5,054,355 - +0.1
5,054,355 - -0.4
5,054,355 - +0.2
5,054,387 + -0.2
5,054,388 - +0.6
5,054,395 + -0.1
5,054,395 + +1.2
5,054,423 + -2.9
5,054,424 - -0.1
5,054,424 - +0.3
5,054,427 + -0.5
5,054,428 - -0.1
5,054,428 - -0.5
5,054,428 - -0.5
5,054,502 + +0.6
5,054,502 + +0.5
5,054,503 - +0.2
5,054,503 - +1.2

Or see this region's nucleotide sequence