Strain Fitness in Serratia liquefaciens MT49 around IAI46_23680

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23675 and IAI46_23680 are separated by 2 nucleotidesIAI46_23680 and IAI46_23685 overlap by 8 nucleotidesIAI46_23685 and IAI46_23690 are separated by 56 nucleotides IAI46_23675: IAI46_23675 - tryptophan--tRNA ligase, at 5,036,207 to 5,037,211 _23675 IAI46_23680: IAI46_23680 - phosphoglycolate phosphatase, at 5,037,214 to 5,037,912 _23680 IAI46_23685: IAI46_23685 - ribulose-phosphate 3-epimerase, at 5,037,905 to 5,038,582 _23685 IAI46_23690: IAI46_23690 - adenine-specific DNA-methyltransferase, at 5,038,639 to 5,039,451 _23690 Position (kb) 5037 5038Strain fitness (log2 ratio) -2 -1 0 1 2at 5036.239 kb on - strandat 5036.403 kb on + strand, within IAI46_23675at 5036.403 kb on + strand, within IAI46_23675at 5036.403 kb on + strand, within IAI46_23675at 5036.403 kb on + strand, within IAI46_23675at 5036.709 kb on + strand, within IAI46_23675at 5036.709 kb on + strand, within IAI46_23675at 5036.710 kb on - strand, within IAI46_23675at 5036.796 kb on + strand, within IAI46_23675at 5036.797 kb on - strand, within IAI46_23675at 5036.797 kb on - strand, within IAI46_23675at 5036.913 kb on + strand, within IAI46_23675at 5036.913 kb on + strand, within IAI46_23675at 5036.914 kb on - strand, within IAI46_23675at 5036.917 kb on + strand, within IAI46_23675at 5036.917 kb on + strand, within IAI46_23675at 5036.917 kb on + strand, within IAI46_23675at 5036.918 kb on - strand, within IAI46_23675at 5036.918 kb on - strand, within IAI46_23675at 5036.918 kb on - strand, within IAI46_23675at 5036.919 kb on + strand, within IAI46_23675at 5036.919 kb on + strand, within IAI46_23675at 5036.919 kb on + strand, within IAI46_23675at 5036.919 kb on + strand, within IAI46_23675at 5036.919 kb on + strand, within IAI46_23675at 5036.920 kb on - strand, within IAI46_23675at 5036.920 kb on - strand, within IAI46_23675at 5036.920 kb on - strand, within IAI46_23675at 5036.920 kb on - strand, within IAI46_23675at 5036.947 kb on + strand, within IAI46_23675at 5036.948 kb on - strand, within IAI46_23675at 5036.948 kb on - strand, within IAI46_23675at 5036.970 kb on - strand, within IAI46_23675at 5036.970 kb on - strand, within IAI46_23675at 5036.970 kb on - strand, within IAI46_23675at 5037.035 kb on - strand, within IAI46_23675at 5037.035 kb on - strand, within IAI46_23675at 5037.096 kb on + strand, within IAI46_23675at 5037.096 kb on + strand, within IAI46_23675at 5037.150 kb on + strandat 5037.150 kb on + strandat 5037.150 kb on + strandat 5037.150 kb on + strandat 5037.150 kb on + strandat 5037.150 kb on + strandat 5037.151 kb on - strandat 5037.151 kb on - strandat 5037.151 kb on - strandat 5037.151 kb on - strandat 5037.151 kb on - strandat 5037.190 kb on + strandat 5037.191 kb on - strandat 5037.194 kb on + strandat 5037.195 kb on - strandat 5037.195 kb on - strandat 5037.195 kb on - strandat 5037.205 kb on + strandat 5037.205 kb on + strandat 5037.205 kb on + strandat 5037.205 kb on + strandat 5037.206 kb on - strandat 5037.216 kb on - strandat 5037.232 kb on + strandat 5037.232 kb on + strandat 5037.318 kb on - strand, within IAI46_23680at 5037.321 kb on + strand, within IAI46_23680at 5037.321 kb on + strand, within IAI46_23680at 5037.324 kb on - strand, within IAI46_23680at 5037.324 kb on - strand, within IAI46_23680at 5037.329 kb on + strand, within IAI46_23680at 5037.330 kb on - strand, within IAI46_23680at 5037.330 kb on - strand, within IAI46_23680at 5037.375 kb on + strand, within IAI46_23680at 5037.375 kb on + strand, within IAI46_23680at 5037.376 kb on - strand, within IAI46_23680at 5037.492 kb on + strand, within IAI46_23680at 5037.596 kb on - strand, within IAI46_23680at 5037.659 kb on + strand, within IAI46_23680at 5037.660 kb on - strand, within IAI46_23680at 5037.660 kb on - strand, within IAI46_23680at 5037.739 kb on + strand, within IAI46_23680at 5037.739 kb on + strand, within IAI46_23680at 5037.740 kb on - strand, within IAI46_23680at 5037.823 kb on - strand, within IAI46_23680at 5037.829 kb on - strand, within IAI46_23680at 5038.209 kb on + strand, within IAI46_23685at 5038.210 kb on - strand, within IAI46_23685at 5038.236 kb on - strand, within IAI46_23685at 5038.458 kb on + strand, within IAI46_23685at 5038.487 kb on + strand, within IAI46_23685at 5038.587 kb on + strandat 5038.615 kb on + strandat 5038.615 kb on + strandat 5038.617 kb on + strandat 5038.618 kb on - strandat 5038.618 kb on - strandat 5038.618 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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5,036,239 - +0.8
5,036,403 + IAI46_23675 0.20 -0.1
5,036,403 + IAI46_23675 0.20 +0.3
5,036,403 + IAI46_23675 0.20 +0.8
5,036,403 + IAI46_23675 0.20 -0.2
5,036,709 + IAI46_23675 0.50 -1.2
5,036,709 + IAI46_23675 0.50 +1.2
5,036,710 - IAI46_23675 0.50 -0.4
5,036,796 + IAI46_23675 0.59 -0.7
5,036,797 - IAI46_23675 0.59 +1.2
5,036,797 - IAI46_23675 0.59 -0.1
5,036,913 + IAI46_23675 0.70 +0.8
5,036,913 + IAI46_23675 0.70 -0.7
5,036,914 - IAI46_23675 0.70 +0.6
5,036,917 + IAI46_23675 0.71 -1.5
5,036,917 + IAI46_23675 0.71 -0.6
5,036,917 + IAI46_23675 0.71 +1.6
5,036,918 - IAI46_23675 0.71 -1.0
5,036,918 - IAI46_23675 0.71 +0.2
5,036,918 - IAI46_23675 0.71 -0.4
5,036,919 + IAI46_23675 0.71 +1.0
5,036,919 + IAI46_23675 0.71 +0.1
5,036,919 + IAI46_23675 0.71 +0.0
5,036,919 + IAI46_23675 0.71 -0.2
5,036,919 + IAI46_23675 0.71 +0.8
5,036,920 - IAI46_23675 0.71 -0.1
5,036,920 - IAI46_23675 0.71 -1.2
5,036,920 - IAI46_23675 0.71 +1.2
5,036,920 - IAI46_23675 0.71 -0.1
5,036,947 + IAI46_23675 0.74 +1.2
5,036,948 - IAI46_23675 0.74 -0.6
5,036,948 - IAI46_23675 0.74 +0.8
5,036,970 - IAI46_23675 0.76 -0.1
5,036,970 - IAI46_23675 0.76 -0.2
5,036,970 - IAI46_23675 0.76 +0.0
5,037,035 - IAI46_23675 0.82 +1.1
5,037,035 - IAI46_23675 0.82 +0.7
5,037,096 + IAI46_23675 0.88 +1.6
5,037,096 + IAI46_23675 0.88 -1.4
5,037,150 + -0.2
5,037,150 + -1.1
5,037,150 + -0.1
5,037,150 + +0.4
5,037,150 + -0.3
5,037,150 + -0.2
5,037,151 - -2.0
5,037,151 - +0.5
5,037,151 - -0.7
5,037,151 - -1.0
5,037,151 - +0.2
5,037,190 + -0.6
5,037,191 - +0.0
5,037,194 + +0.5
5,037,195 - +0.9
5,037,195 - +0.4
5,037,195 - +1.0
5,037,205 + +0.3
5,037,205 + +0.2
5,037,205 + -0.4
5,037,205 + +1.0
5,037,206 - +0.3
5,037,216 - -0.9
5,037,232 + -0.3
5,037,232 + -1.9
5,037,318 - IAI46_23680 0.15 +0.5
5,037,321 + IAI46_23680 0.15 +0.6
5,037,321 + IAI46_23680 0.15 -0.4
5,037,324 - IAI46_23680 0.16 -0.4
5,037,324 - IAI46_23680 0.16 -0.6
5,037,329 + IAI46_23680 0.16 +0.3
5,037,330 - IAI46_23680 0.17 -0.3
5,037,330 - IAI46_23680 0.17 +0.7
5,037,375 + IAI46_23680 0.23 +0.6
5,037,375 + IAI46_23680 0.23 +0.1
5,037,376 - IAI46_23680 0.23 -0.3
5,037,492 + IAI46_23680 0.40 -0.3
5,037,596 - IAI46_23680 0.55 -1.3
5,037,659 + IAI46_23680 0.64 +0.4
5,037,660 - IAI46_23680 0.64 +0.2
5,037,660 - IAI46_23680 0.64 +0.8
5,037,739 + IAI46_23680 0.75 +0.5
5,037,739 + IAI46_23680 0.75 +0.9
5,037,740 - IAI46_23680 0.75 +0.6
5,037,823 - IAI46_23680 0.87 -0.5
5,037,829 - IAI46_23680 0.88 +0.1
5,038,209 + IAI46_23685 0.45 +1.4
5,038,210 - IAI46_23685 0.45 -0.2
5,038,236 - IAI46_23685 0.49 +2.2
5,038,458 + IAI46_23685 0.82 -0.6
5,038,487 + IAI46_23685 0.86 +0.0
5,038,587 + +0.4
5,038,615 + +0.9
5,038,615 + +0.9
5,038,617 + +0.8
5,038,618 - -0.3
5,038,618 - -0.2
5,038,618 - +0.9

Or see this region's nucleotide sequence