Strain Fitness in Serratia liquefaciens MT49 around IAI46_22780

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22775 and IAI46_22780 are separated by 21 nucleotidesIAI46_22780 and IAI46_22785 are separated by 133 nucleotides IAI46_22775: IAI46_22775 - tRNA dihydrouridine synthase DusB, at 4,849,312 to 4,850,277 _22775 IAI46_22780: IAI46_22780 - DNA-binding transcriptional regulator Fis, at 4,850,299 to 4,850,595 _22780 IAI46_22785: IAI46_22785 - APC family permease, at 4,850,729 to 4,852,126 _22785 Position (kb) 4850 4851Strain fitness (log2 ratio) -2 -1 0 1 2at 4849.335 kb on + strandat 4849.335 kb on + strandat 4849.335 kb on + strandat 4849.335 kb on + strandat 4849.371 kb on + strandat 4849.386 kb on + strandat 4849.387 kb on - strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.394 kb on + strandat 4849.395 kb on - strandat 4849.467 kb on + strand, within IAI46_22775at 4849.545 kb on + strand, within IAI46_22775at 4849.563 kb on + strand, within IAI46_22775at 4849.566 kb on + strand, within IAI46_22775at 4849.566 kb on + strand, within IAI46_22775at 4849.602 kb on + strand, within IAI46_22775at 4849.725 kb on + strand, within IAI46_22775at 4849.759 kb on - strand, within IAI46_22775at 4849.797 kb on + strand, within IAI46_22775at 4849.797 kb on + strand, within IAI46_22775at 4849.797 kb on + strand, within IAI46_22775at 4849.797 kb on + strand, within IAI46_22775at 4849.798 kb on - strand, within IAI46_22775at 4849.799 kb on + strand, within IAI46_22775at 4849.799 kb on + strand, within IAI46_22775at 4849.799 kb on + strand, within IAI46_22775at 4849.858 kb on + strand, within IAI46_22775at 4849.932 kb on + strand, within IAI46_22775at 4849.954 kb on + strand, within IAI46_22775at 4849.955 kb on - strand, within IAI46_22775at 4850.029 kb on + strand, within IAI46_22775at 4850.097 kb on + strand, within IAI46_22775at 4850.151 kb on + strand, within IAI46_22775at 4850.159 kb on + strand, within IAI46_22775at 4850.159 kb on + strand, within IAI46_22775at 4850.298 kb on + strandat 4850.596 kb on + strandat 4850.597 kb on - strandat 4850.599 kb on + strandat 4850.599 kb on + strandat 4850.599 kb on + strandat 4850.599 kb on + strandat 4850.600 kb on - strandat 4850.600 kb on - strandat 4850.669 kb on + strandat 4850.720 kb on + strandat 4850.720 kb on + strandat 4850.721 kb on - strandat 4850.721 kb on - strandat 4850.721 kb on - strandat 4850.721 kb on - strandat 4850.721 kb on - strandat 4850.727 kb on + strandat 4850.727 kb on + strandat 4850.730 kb on + strandat 4850.730 kb on + strandat 4850.731 kb on - strandat 4850.731 kb on - strandat 4850.814 kb on + strandat 4850.814 kb on + strandat 4850.815 kb on - strandat 4850.848 kb on + strandat 4850.848 kb on + strandat 4850.849 kb on - strandat 4850.886 kb on + strand, within IAI46_22785at 4850.886 kb on + strand, within IAI46_22785at 4850.918 kb on + strand, within IAI46_22785at 4850.919 kb on - strand, within IAI46_22785at 4850.919 kb on - strand, within IAI46_22785at 4850.919 kb on - strand, within IAI46_22785at 4850.941 kb on - strand, within IAI46_22785at 4850.997 kb on + strand, within IAI46_22785at 4850.998 kb on - strand, within IAI46_22785at 4850.998 kb on - strand, within IAI46_22785at 4851.038 kb on + strand, within IAI46_22785at 4851.038 kb on + strand, within IAI46_22785at 4851.039 kb on - strand, within IAI46_22785at 4851.122 kb on + strand, within IAI46_22785at 4851.136 kb on + strand, within IAI46_22785at 4851.248 kb on + strand, within IAI46_22785at 4851.341 kb on - strand, within IAI46_22785at 4851.373 kb on - strand, within IAI46_22785at 4851.373 kb on - strand, within IAI46_22785at 4851.390 kb on - strand, within IAI46_22785at 4851.428 kb on - strand, within IAI46_22785at 4851.440 kb on - strand, within IAI46_22785at 4851.461 kb on - strand, within IAI46_22785at 4851.483 kb on + strand, within IAI46_22785at 4851.587 kb on - strand, within IAI46_22785at 4851.593 kb on - strand, within IAI46_22785at 4851.593 kb on - strand, within IAI46_22785

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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4,849,335 + +0.2
4,849,335 + +0.3
4,849,335 + +1.0
4,849,335 + +0.0
4,849,371 + +0.0
4,849,386 + +0.5
4,849,387 - +1.2
4,849,394 + -0.6
4,849,394 + +0.4
4,849,394 + +0.5
4,849,394 + +0.6
4,849,394 + +1.5
4,849,394 + +0.7
4,849,394 + -0.0
4,849,394 + +0.5
4,849,394 + +1.1
4,849,394 + +1.3
4,849,394 + -0.9
4,849,395 - -0.1
4,849,467 + IAI46_22775 0.16 +0.4
4,849,545 + IAI46_22775 0.24 +0.4
4,849,563 + IAI46_22775 0.26 -0.1
4,849,566 + IAI46_22775 0.26 -1.2
4,849,566 + IAI46_22775 0.26 +2.4
4,849,602 + IAI46_22775 0.30 +0.4
4,849,725 + IAI46_22775 0.43 -0.2
4,849,759 - IAI46_22775 0.46 +0.2
4,849,797 + IAI46_22775 0.50 -0.8
4,849,797 + IAI46_22775 0.50 +0.1
4,849,797 + IAI46_22775 0.50 +0.6
4,849,797 + IAI46_22775 0.50 +0.1
4,849,798 - IAI46_22775 0.50 +0.2
4,849,799 + IAI46_22775 0.50 +0.1
4,849,799 + IAI46_22775 0.50 -1.2
4,849,799 + IAI46_22775 0.50 +0.2
4,849,858 + IAI46_22775 0.57 -0.4
4,849,932 + IAI46_22775 0.64 -0.1
4,849,954 + IAI46_22775 0.66 -1.8
4,849,955 - IAI46_22775 0.67 -0.4
4,850,029 + IAI46_22775 0.74 -0.6
4,850,097 + IAI46_22775 0.81 -0.6
4,850,151 + IAI46_22775 0.87 +0.9
4,850,159 + IAI46_22775 0.88 +0.3
4,850,159 + IAI46_22775 0.88 -0.1
4,850,298 + +1.5
4,850,596 + +0.2
4,850,597 - +0.3
4,850,599 + -0.9
4,850,599 + -0.2
4,850,599 + -0.6
4,850,599 + -0.9
4,850,600 - +0.9
4,850,600 - -0.6
4,850,669 + +1.1
4,850,720 + +0.0
4,850,720 + +1.0
4,850,721 - +1.0
4,850,721 - +0.3
4,850,721 - +0.7
4,850,721 - +0.0
4,850,721 - +0.0
4,850,727 + -0.3
4,850,727 + +0.5
4,850,730 + +0.1
4,850,730 + -0.7
4,850,731 - +0.8
4,850,731 - -0.3
4,850,814 + -0.0
4,850,814 + -0.8
4,850,815 - +0.5
4,850,848 + +0.5
4,850,848 + +0.0
4,850,849 - +0.8
4,850,886 + IAI46_22785 0.11 -0.1
4,850,886 + IAI46_22785 0.11 +0.6
4,850,918 + IAI46_22785 0.14 +0.9
4,850,919 - IAI46_22785 0.14 -0.2
4,850,919 - IAI46_22785 0.14 +0.2
4,850,919 - IAI46_22785 0.14 -0.0
4,850,941 - IAI46_22785 0.15 -0.6
4,850,997 + IAI46_22785 0.19 +2.4
4,850,998 - IAI46_22785 0.19 +0.3
4,850,998 - IAI46_22785 0.19 +0.6
4,851,038 + IAI46_22785 0.22 +0.3
4,851,038 + IAI46_22785 0.22 +0.2
4,851,039 - IAI46_22785 0.22 -0.2
4,851,122 + IAI46_22785 0.28 -2.5
4,851,136 + IAI46_22785 0.29 +0.2
4,851,248 + IAI46_22785 0.37 +0.1
4,851,341 - IAI46_22785 0.44 -0.5
4,851,373 - IAI46_22785 0.46 -0.4
4,851,373 - IAI46_22785 0.46 -0.4
4,851,390 - IAI46_22785 0.47 -0.0
4,851,428 - IAI46_22785 0.50 -2.2
4,851,440 - IAI46_22785 0.51 +0.9
4,851,461 - IAI46_22785 0.52 -1.4
4,851,483 + IAI46_22785 0.54 -0.3
4,851,587 - IAI46_22785 0.61 +1.8
4,851,593 - IAI46_22785 0.62 +0.0
4,851,593 - IAI46_22785 0.62 +0.2

Or see this region's nucleotide sequence