Strain Fitness in Serratia liquefaciens MT49 around IAI46_22480

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22470 and IAI46_22475 are separated by 23 nucleotidesIAI46_22475 and IAI46_22480 are separated by 158 nucleotidesIAI46_22480 and IAI46_22485 are separated by 131 nucleotidesIAI46_22485 and IAI46_22490 overlap by 4 nucleotides IAI46_22470: IAI46_22470 - RNA polymerase factor sigma-54, at 4,783,460 to 4,784,893 _22470 IAI46_22475: IAI46_22475 - ribosome hibernation promoting factor, at 4,784,917 to 4,785,204 _22475 IAI46_22480: IAI46_22480 - PTS IIA-like nitrogen regulatory protein PtsN, at 4,785,363 to 4,785,824 _22480 IAI46_22485: IAI46_22485 - RNase adapter RapZ, at 4,785,956 to 4,786,810 _22485 IAI46_22490: IAI46_22490 - PTS phosphocarrier protein NPr, at 4,786,807 to 4,787,079 _22490 Position (kb) 4785 4786Strain fitness (log2 ratio) -1 0 1 2 3at 4784.827 kb on + strandat 4784.879 kb on - strandat 4784.898 kb on + strandat 4784.899 kb on - strandat 4784.899 kb on - strandat 4784.916 kb on + strandat 4784.916 kb on + strandat 4784.916 kb on + strandat 4784.916 kb on + strandat 4784.916 kb on + strandat 4784.917 kb on - strandat 4784.931 kb on + strandat 4785.004 kb on + strand, within IAI46_22475at 4785.005 kb on - strand, within IAI46_22475at 4785.017 kb on + strand, within IAI46_22475at 4785.028 kb on + strand, within IAI46_22475at 4785.028 kb on + strand, within IAI46_22475at 4785.028 kb on + strand, within IAI46_22475at 4785.028 kb on + strand, within IAI46_22475at 4785.028 kb on + strand, within IAI46_22475at 4785.028 kb on + strand, within IAI46_22475at 4785.028 kb on + strand, within IAI46_22475at 4785.028 kb on + strand, within IAI46_22475at 4785.028 kb on + strand, within IAI46_22475at 4785.029 kb on - strand, within IAI46_22475at 4785.029 kb on - strand, within IAI46_22475at 4785.029 kb on - strand, within IAI46_22475at 4785.039 kb on + strand, within IAI46_22475at 4785.039 kb on + strand, within IAI46_22475at 4785.039 kb on + strand, within IAI46_22475at 4785.039 kb on + strand, within IAI46_22475at 4785.039 kb on + strand, within IAI46_22475at 4785.040 kb on - strand, within IAI46_22475at 4785.040 kb on - strand, within IAI46_22475at 4785.040 kb on - strand, within IAI46_22475at 4785.127 kb on + strand, within IAI46_22475at 4785.127 kb on + strand, within IAI46_22475at 4785.128 kb on - strand, within IAI46_22475at 4785.128 kb on - strand, within IAI46_22475at 4785.128 kb on - strand, within IAI46_22475at 4785.128 kb on - strand, within IAI46_22475at 4785.266 kb on - strandat 4785.301 kb on + strandat 4785.301 kb on + strandat 4785.349 kb on + strandat 4785.385 kb on + strandat 4785.397 kb on + strandat 4785.402 kb on - strandat 4785.635 kb on + strand, within IAI46_22480at 4785.708 kb on - strand, within IAI46_22480at 4785.763 kb on + strand, within IAI46_22480at 4785.804 kb on + strandat 4785.805 kb on - strandat 4785.822 kb on + strandat 4785.822 kb on + strandat 4785.861 kb on - strandat 4785.861 kb on - strandat 4785.867 kb on + strandat 4785.868 kb on - strandat 4785.902 kb on - strandat 4785.910 kb on + strandat 4786.034 kb on + strandat 4786.081 kb on + strand, within IAI46_22485at 4786.160 kb on + strand, within IAI46_22485at 4786.241 kb on + strand, within IAI46_22485at 4786.249 kb on + strand, within IAI46_22485at 4786.249 kb on + strand, within IAI46_22485at 4786.249 kb on + strand, within IAI46_22485at 4786.250 kb on - strand, within IAI46_22485at 4786.490 kb on + strand, within IAI46_22485at 4786.503 kb on + strand, within IAI46_22485at 4786.504 kb on - strand, within IAI46_22485at 4786.610 kb on - strand, within IAI46_22485at 4786.613 kb on + strand, within IAI46_22485at 4786.613 kb on + strand, within IAI46_22485at 4786.614 kb on - strand, within IAI46_22485at 4786.614 kb on - strand, within IAI46_22485at 4786.628 kb on + strand, within IAI46_22485at 4786.628 kb on + strand, within IAI46_22485at 4786.628 kb on + strand, within IAI46_22485at 4786.629 kb on - strand, within IAI46_22485at 4786.674 kb on - strand, within IAI46_22485at 4786.721 kb on + strand, within IAI46_22485at 4786.721 kb on + strand, within IAI46_22485at 4786.721 kb on + strand, within IAI46_22485at 4786.722 kb on - strand, within IAI46_22485at 4786.722 kb on - strand, within IAI46_22485at 4786.722 kb on - strand, within IAI46_22485at 4786.746 kb on - strandat 4786.770 kb on + strandat 4786.771 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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4,784,827 + -0.1
4,784,879 - +1.9
4,784,898 + +0.5
4,784,899 - +0.6
4,784,899 - -0.3
4,784,916 + +0.1
4,784,916 + +0.2
4,784,916 + +0.8
4,784,916 + -0.2
4,784,916 + -0.5
4,784,917 - +1.7
4,784,931 + -0.6
4,785,004 + IAI46_22475 0.30 +0.4
4,785,005 - IAI46_22475 0.31 -0.4
4,785,017 + IAI46_22475 0.35 -0.3
4,785,028 + IAI46_22475 0.39 +0.5
4,785,028 + IAI46_22475 0.39 -0.0
4,785,028 + IAI46_22475 0.39 +0.3
4,785,028 + IAI46_22475 0.39 +0.1
4,785,028 + IAI46_22475 0.39 -0.1
4,785,028 + IAI46_22475 0.39 -0.2
4,785,028 + IAI46_22475 0.39 +0.2
4,785,028 + IAI46_22475 0.39 -0.1
4,785,028 + IAI46_22475 0.39 +3.2
4,785,029 - IAI46_22475 0.39 +0.3
4,785,029 - IAI46_22475 0.39 +1.5
4,785,029 - IAI46_22475 0.39 +0.0
4,785,039 + IAI46_22475 0.42 +1.9
4,785,039 + IAI46_22475 0.42 +0.4
4,785,039 + IAI46_22475 0.42 +0.7
4,785,039 + IAI46_22475 0.42 +0.1
4,785,039 + IAI46_22475 0.42 +0.7
4,785,040 - IAI46_22475 0.43 -0.7
4,785,040 - IAI46_22475 0.43 +0.2
4,785,040 - IAI46_22475 0.43 -0.0
4,785,127 + IAI46_22475 0.73 -0.1
4,785,127 + IAI46_22475 0.73 -0.5
4,785,128 - IAI46_22475 0.73 -0.6
4,785,128 - IAI46_22475 0.73 +2.0
4,785,128 - IAI46_22475 0.73 +0.3
4,785,128 - IAI46_22475 0.73 +0.7
4,785,266 - -0.1
4,785,301 + -1.1
4,785,301 + +0.2
4,785,349 + -1.0
4,785,385 + +1.0
4,785,397 + +0.2
4,785,402 - -0.1
4,785,635 + IAI46_22480 0.59 +0.2
4,785,708 - IAI46_22480 0.75 -0.0
4,785,763 + IAI46_22480 0.87 +0.1
4,785,804 + +0.7
4,785,805 - +1.3
4,785,822 + -0.4
4,785,822 + -0.1
4,785,861 - +0.5
4,785,861 - +0.7
4,785,867 + +1.3
4,785,868 - +0.8
4,785,902 - +0.0
4,785,910 + +1.0
4,786,034 + -0.1
4,786,081 + IAI46_22485 0.15 -0.5
4,786,160 + IAI46_22485 0.24 +0.1
4,786,241 + IAI46_22485 0.33 +0.2
4,786,249 + IAI46_22485 0.34 -0.4
4,786,249 + IAI46_22485 0.34 +0.7
4,786,249 + IAI46_22485 0.34 +0.2
4,786,250 - IAI46_22485 0.34 +0.3
4,786,490 + IAI46_22485 0.62 +0.0
4,786,503 + IAI46_22485 0.64 +0.4
4,786,504 - IAI46_22485 0.64 +1.8
4,786,610 - IAI46_22485 0.76 -0.4
4,786,613 + IAI46_22485 0.77 +0.1
4,786,613 + IAI46_22485 0.77 -0.2
4,786,614 - IAI46_22485 0.77 +0.7
4,786,614 - IAI46_22485 0.77 +0.7
4,786,628 + IAI46_22485 0.79 +0.8
4,786,628 + IAI46_22485 0.79 +1.3
4,786,628 + IAI46_22485 0.79 +0.3
4,786,629 - IAI46_22485 0.79 +0.2
4,786,674 - IAI46_22485 0.84 +0.0
4,786,721 + IAI46_22485 0.89 -0.1
4,786,721 + IAI46_22485 0.89 -0.6
4,786,721 + IAI46_22485 0.89 +0.6
4,786,722 - IAI46_22485 0.90 -0.6
4,786,722 - IAI46_22485 0.90 -0.3
4,786,722 - IAI46_22485 0.90 +0.0
4,786,746 - -0.4
4,786,770 + -0.6
4,786,771 - -1.1

Or see this region's nucleotide sequence