Strain Fitness in Serratia liquefaciens MT49 around IAI46_21525

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21520 and IAI46_21525 overlap by 14 nucleotidesIAI46_21525 and IAI46_21530 are separated by 140 nucleotides IAI46_21520: IAI46_21520 - HlyD family type I secretion periplasmic adaptor subunit, at 4,560,622 to 4,561,941 _21520 IAI46_21525: IAI46_21525 - type I secretion system permease/ATPase, at 4,561,928 to 4,563,673 _21525 IAI46_21530: IAI46_21530 - DUF4214 domain-containing protein, at 4,563,814 to 4,566,900 _21530 Position (kb) 4561 4562 4563 4564Strain fitness (log2 ratio) -2 -1 0 1 2at 4561.013 kb on - strand, within IAI46_21520at 4561.013 kb on - strand, within IAI46_21520at 4561.026 kb on + strand, within IAI46_21520at 4561.078 kb on - strand, within IAI46_21520at 4561.079 kb on + strand, within IAI46_21520at 4561.080 kb on - strand, within IAI46_21520at 4561.080 kb on - strand, within IAI46_21520at 4561.080 kb on - strand, within IAI46_21520at 4561.080 kb on - strand, within IAI46_21520at 4561.080 kb on - strand, within IAI46_21520at 4561.080 kb on - strand, within IAI46_21520at 4561.172 kb on + strand, within IAI46_21520at 4561.277 kb on + strand, within IAI46_21520at 4561.277 kb on + strand, within IAI46_21520at 4561.278 kb on - strand, within IAI46_21520at 4561.328 kb on - strand, within IAI46_21520at 4561.341 kb on + strand, within IAI46_21520at 4561.386 kb on + strand, within IAI46_21520at 4561.489 kb on + strand, within IAI46_21520at 4561.490 kb on - strand, within IAI46_21520at 4561.509 kb on + strand, within IAI46_21520at 4561.562 kb on + strand, within IAI46_21520at 4561.562 kb on + strand, within IAI46_21520at 4561.563 kb on - strand, within IAI46_21520at 4561.611 kb on + strand, within IAI46_21520at 4561.611 kb on + strand, within IAI46_21520at 4561.612 kb on - strand, within IAI46_21520at 4561.612 kb on - strand, within IAI46_21520at 4561.616 kb on + strand, within IAI46_21520at 4561.616 kb on + strand, within IAI46_21520at 4561.616 kb on + strand, within IAI46_21520at 4561.616 kb on + strand, within IAI46_21520at 4561.616 kb on + strand, within IAI46_21520at 4561.617 kb on - strand, within IAI46_21520at 4561.617 kb on - strand, within IAI46_21520at 4561.617 kb on - strand, within IAI46_21520at 4561.617 kb on - strand, within IAI46_21520at 4561.618 kb on - strand, within IAI46_21520at 4561.628 kb on + strand, within IAI46_21520at 4561.628 kb on + strand, within IAI46_21520at 4561.628 kb on + strand, within IAI46_21520at 4561.629 kb on - strand, within IAI46_21520at 4561.629 kb on - strand, within IAI46_21520at 4561.791 kb on + strand, within IAI46_21520at 4561.988 kb on + strandat 4561.989 kb on - strandat 4562.021 kb on - strandat 4562.021 kb on - strandat 4562.021 kb on - strandat 4562.021 kb on - strandat 4562.021 kb on - strandat 4562.021 kb on - strandat 4562.074 kb on + strandat 4562.074 kb on + strandat 4562.221 kb on - strand, within IAI46_21525at 4562.221 kb on - strand, within IAI46_21525at 4562.221 kb on - strand, within IAI46_21525at 4562.222 kb on + strand, within IAI46_21525at 4562.222 kb on + strand, within IAI46_21525at 4562.222 kb on + strand, within IAI46_21525at 4562.223 kb on - strand, within IAI46_21525at 4562.288 kb on + strand, within IAI46_21525at 4562.289 kb on - strand, within IAI46_21525at 4562.298 kb on + strand, within IAI46_21525at 4562.330 kb on + strand, within IAI46_21525at 4562.330 kb on + strand, within IAI46_21525at 4562.330 kb on + strand, within IAI46_21525at 4562.331 kb on - strand, within IAI46_21525at 4562.483 kb on - strand, within IAI46_21525at 4562.579 kb on + strand, within IAI46_21525at 4562.624 kb on + strand, within IAI46_21525at 4562.624 kb on + strand, within IAI46_21525at 4562.624 kb on + strand, within IAI46_21525at 4562.624 kb on + strand, within IAI46_21525at 4562.625 kb on - strand, within IAI46_21525at 4562.627 kb on + strand, within IAI46_21525at 4562.628 kb on - strand, within IAI46_21525at 4562.758 kb on - strand, within IAI46_21525at 4562.867 kb on - strand, within IAI46_21525at 4562.867 kb on - strand, within IAI46_21525at 4562.904 kb on - strand, within IAI46_21525at 4562.904 kb on - strand, within IAI46_21525at 4562.927 kb on + strand, within IAI46_21525at 4562.927 kb on + strand, within IAI46_21525at 4562.951 kb on - strand, within IAI46_21525at 4562.998 kb on + strand, within IAI46_21525at 4562.999 kb on - strand, within IAI46_21525at 4562.999 kb on - strand, within IAI46_21525at 4563.101 kb on - strand, within IAI46_21525at 4563.170 kb on + strand, within IAI46_21525at 4563.171 kb on - strand, within IAI46_21525at 4563.174 kb on - strand, within IAI46_21525at 4563.174 kb on - strand, within IAI46_21525at 4563.174 kb on - strand, within IAI46_21525at 4563.174 kb on - strand, within IAI46_21525at 4563.174 kb on - strand, within IAI46_21525at 4563.174 kb on - strand, within IAI46_21525at 4563.201 kb on - strand, within IAI46_21525at 4563.234 kb on + strand, within IAI46_21525at 4563.372 kb on + strand, within IAI46_21525at 4563.430 kb on + strand, within IAI46_21525at 4563.431 kb on - strand, within IAI46_21525at 4563.431 kb on - strand, within IAI46_21525at 4563.439 kb on - strand, within IAI46_21525at 4563.439 kb on - strand, within IAI46_21525at 4563.458 kb on + strand, within IAI46_21525at 4563.458 kb on + strand, within IAI46_21525at 4563.458 kb on + strand, within IAI46_21525at 4563.459 kb on - strand, within IAI46_21525at 4563.544 kb on + strandat 4563.544 kb on + strandat 4563.544 kb on + strandat 4563.545 kb on - strandat 4563.545 kb on - strandat 4563.545 kb on - strandat 4563.546 kb on + strandat 4563.546 kb on + strandat 4563.546 kb on + strandat 4563.547 kb on - strandat 4563.547 kb on - strandat 4563.560 kb on + strandat 4563.560 kb on + strandat 4563.560 kb on + strandat 4563.561 kb on - strandat 4563.586 kb on + strandat 4563.586 kb on + strandat 4563.638 kb on + strandat 4563.638 kb on + strandat 4563.639 kb on - strandat 4563.639 kb on - strandat 4563.639 kb on - strandat 4563.673 kb on + strandat 4563.673 kb on + strandat 4563.674 kb on - strandat 4563.725 kb on + strandat 4563.878 kb on + strandat 4563.879 kb on - strandat 4563.926 kb on - strandat 4563.926 kb on - strandat 4564.024 kb on - strandat 4564.024 kb on - strandat 4564.024 kb on - strandat 4564.024 kb on - strandat 4564.029 kb on + strandat 4564.030 kb on - strandat 4564.063 kb on + strandat 4564.063 kb on + strandat 4564.063 kb on + strandat 4564.072 kb on + strandat 4564.072 kb on + strandat 4564.107 kb on + strandat 4564.108 kb on - strandat 4564.111 kb on + strandat 4564.112 kb on - strandat 4564.116 kb on + strandat 4564.139 kb on + strand, within IAI46_21530at 4564.139 kb on + strand, within IAI46_21530at 4564.140 kb on - strand, within IAI46_21530at 4564.140 kb on - strand, within IAI46_21530at 4564.140 kb on - strand, within IAI46_21530at 4564.140 kb on - strand, within IAI46_21530at 4564.143 kb on + strand, within IAI46_21530at 4564.143 kb on + strand, within IAI46_21530at 4564.144 kb on - strand, within IAI46_21530at 4564.144 kb on - strand, within IAI46_21530at 4564.148 kb on - strand, within IAI46_21530at 4564.156 kb on - strand, within IAI46_21530at 4564.180 kb on + strand, within IAI46_21530at 4564.201 kb on + strand, within IAI46_21530at 4564.206 kb on + strand, within IAI46_21530at 4564.207 kb on - strand, within IAI46_21530at 4564.217 kb on + strand, within IAI46_21530at 4564.217 kb on + strand, within IAI46_21530at 4564.270 kb on - strand, within IAI46_21530at 4564.297 kb on + strand, within IAI46_21530at 4564.297 kb on + strand, within IAI46_21530at 4564.298 kb on - strand, within IAI46_21530at 4564.298 kb on - strand, within IAI46_21530at 4564.342 kb on - strand, within IAI46_21530at 4564.378 kb on + strand, within IAI46_21530at 4564.378 kb on + strand, within IAI46_21530at 4564.402 kb on + strand, within IAI46_21530at 4564.459 kb on + strand, within IAI46_21530at 4564.480 kb on - strand, within IAI46_21530at 4564.480 kb on - strand, within IAI46_21530at 4564.480 kb on - strand, within IAI46_21530at 4564.557 kb on + strand, within IAI46_21530at 4564.558 kb on - strand, within IAI46_21530at 4564.558 kb on - strand, within IAI46_21530at 4564.558 kb on - strand, within IAI46_21530at 4564.558 kb on - strand, within IAI46_21530at 4564.559 kb on + strand, within IAI46_21530at 4564.559 kb on + strand, within IAI46_21530at 4564.560 kb on - strand, within IAI46_21530at 4564.560 kb on - strand, within IAI46_21530at 4564.560 kb on - strand, within IAI46_21530at 4564.560 kb on - strand, within IAI46_21530at 4564.605 kb on + strand, within IAI46_21530at 4564.605 kb on + strand, within IAI46_21530at 4564.614 kb on + strand, within IAI46_21530at 4564.614 kb on + strand, within IAI46_21530

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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4,561,013 - IAI46_21520 0.30 +0.1
4,561,013 - IAI46_21520 0.30 -0.8
4,561,026 + IAI46_21520 0.31 +0.3
4,561,078 - IAI46_21520 0.35 +0.3
4,561,079 + IAI46_21520 0.35 +0.8
4,561,080 - IAI46_21520 0.35 +0.4
4,561,080 - IAI46_21520 0.35 -1.5
4,561,080 - IAI46_21520 0.35 +0.5
4,561,080 - IAI46_21520 0.35 +0.0
4,561,080 - IAI46_21520 0.35 +0.2
4,561,080 - IAI46_21520 0.35 +0.2
4,561,172 + IAI46_21520 0.42 +0.2
4,561,277 + IAI46_21520 0.50 -0.0
4,561,277 + IAI46_21520 0.50 -0.3
4,561,278 - IAI46_21520 0.50 +0.9
4,561,328 - IAI46_21520 0.53 -0.0
4,561,341 + IAI46_21520 0.54 +1.1
4,561,386 + IAI46_21520 0.58 -0.3
4,561,489 + IAI46_21520 0.66 +0.5
4,561,490 - IAI46_21520 0.66 +0.4
4,561,509 + IAI46_21520 0.67 +0.8
4,561,562 + IAI46_21520 0.71 +0.1
4,561,562 + IAI46_21520 0.71 -0.3
4,561,563 - IAI46_21520 0.71 +0.1
4,561,611 + IAI46_21520 0.75 -0.5
4,561,611 + IAI46_21520 0.75 +0.7
4,561,612 - IAI46_21520 0.75 -0.7
4,561,612 - IAI46_21520 0.75 -0.2
4,561,616 + IAI46_21520 0.75 +1.2
4,561,616 + IAI46_21520 0.75 +0.3
4,561,616 + IAI46_21520 0.75 -0.2
4,561,616 + IAI46_21520 0.75 -0.0
4,561,616 + IAI46_21520 0.75 -0.2
4,561,617 - IAI46_21520 0.75 +0.6
4,561,617 - IAI46_21520 0.75 -0.2
4,561,617 - IAI46_21520 0.75 -1.7
4,561,617 - IAI46_21520 0.75 -0.4
4,561,618 - IAI46_21520 0.75 +0.4
4,561,628 + IAI46_21520 0.76 -0.4
4,561,628 + IAI46_21520 0.76 -1.3
4,561,628 + IAI46_21520 0.76 -0.2
4,561,629 - IAI46_21520 0.76 +1.3
4,561,629 - IAI46_21520 0.76 +0.1
4,561,791 + IAI46_21520 0.89 +0.2
4,561,988 + +0.0
4,561,989 - +0.4
4,562,021 - -0.3
4,562,021 - +1.0
4,562,021 - -0.0
4,562,021 - +1.0
4,562,021 - -0.4
4,562,021 - +0.1
4,562,074 + +1.2
4,562,074 + -0.1
4,562,221 - IAI46_21525 0.17 +1.2
4,562,221 - IAI46_21525 0.17 +0.4
4,562,221 - IAI46_21525 0.17 +1.3
4,562,222 + IAI46_21525 0.17 -0.4
4,562,222 + IAI46_21525 0.17 +0.4
4,562,222 + IAI46_21525 0.17 +0.5
4,562,223 - IAI46_21525 0.17 -0.7
4,562,288 + IAI46_21525 0.21 +0.7
4,562,289 - IAI46_21525 0.21 +0.3
4,562,298 + IAI46_21525 0.21 -0.3
4,562,330 + IAI46_21525 0.23 +0.3
4,562,330 + IAI46_21525 0.23 +0.8
4,562,330 + IAI46_21525 0.23 -0.3
4,562,331 - IAI46_21525 0.23 -0.1
4,562,483 - IAI46_21525 0.32 +0.6
4,562,579 + IAI46_21525 0.37 +0.2
4,562,624 + IAI46_21525 0.40 +0.2
4,562,624 + IAI46_21525 0.40 +0.8
4,562,624 + IAI46_21525 0.40 +0.4
4,562,624 + IAI46_21525 0.40 +0.4
4,562,625 - IAI46_21525 0.40 +0.6
4,562,627 + IAI46_21525 0.40 +2.0
4,562,628 - IAI46_21525 0.40 -0.5
4,562,758 - IAI46_21525 0.48 +0.5
4,562,867 - IAI46_21525 0.54 +1.5
4,562,867 - IAI46_21525 0.54 +0.3
4,562,904 - IAI46_21525 0.56 -1.1
4,562,904 - IAI46_21525 0.56 +0.3
4,562,927 + IAI46_21525 0.57 -0.2
4,562,927 + IAI46_21525 0.57 +0.6
4,562,951 - IAI46_21525 0.59 +1.0
4,562,998 + IAI46_21525 0.61 +0.0
4,562,999 - IAI46_21525 0.61 -0.2
4,562,999 - IAI46_21525 0.61 -0.4
4,563,101 - IAI46_21525 0.67 -0.3
4,563,170 + IAI46_21525 0.71 +0.5
4,563,171 - IAI46_21525 0.71 +0.0
4,563,174 - IAI46_21525 0.71 +0.3
4,563,174 - IAI46_21525 0.71 +0.1
4,563,174 - IAI46_21525 0.71 -0.2
4,563,174 - IAI46_21525 0.71 -1.2
4,563,174 - IAI46_21525 0.71 -0.6
4,563,174 - IAI46_21525 0.71 +0.0
4,563,201 - IAI46_21525 0.73 -0.4
4,563,234 + IAI46_21525 0.75 -0.9
4,563,372 + IAI46_21525 0.83 +1.9
4,563,430 + IAI46_21525 0.86 -0.0
4,563,431 - IAI46_21525 0.86 -0.5
4,563,431 - IAI46_21525 0.86 -0.1
4,563,439 - IAI46_21525 0.87 -0.0
4,563,439 - IAI46_21525 0.87 -0.3
4,563,458 + IAI46_21525 0.88 -0.8
4,563,458 + IAI46_21525 0.88 -1.0
4,563,458 + IAI46_21525 0.88 +0.6
4,563,459 - IAI46_21525 0.88 +0.4
4,563,544 + -0.6
4,563,544 + +0.9
4,563,544 + +0.8
4,563,545 - +0.3
4,563,545 - -0.7
4,563,545 - -0.4
4,563,546 + +1.0
4,563,546 + +0.8
4,563,546 + +0.2
4,563,547 - +1.5
4,563,547 - +0.4
4,563,560 + +0.2
4,563,560 + -0.9
4,563,560 + -0.4
4,563,561 - +0.3
4,563,586 + -0.0
4,563,586 + +0.3
4,563,638 + +1.0
4,563,638 + -0.2
4,563,639 - +0.2
4,563,639 - -0.1
4,563,639 - -0.2
4,563,673 + +0.1
4,563,673 + -1.3
4,563,674 - +0.6
4,563,725 + -0.8
4,563,878 + -0.3
4,563,879 - +0.3
4,563,926 - +0.7
4,563,926 - -0.3
4,564,024 - -0.1
4,564,024 - +0.4
4,564,024 - -0.9
4,564,024 - -0.7
4,564,029 + -0.9
4,564,030 - +0.2
4,564,063 + -0.5
4,564,063 + +0.4
4,564,063 + +0.6
4,564,072 + +0.3
4,564,072 + -0.8
4,564,107 + +0.8
4,564,108 - -1.4
4,564,111 + +1.2
4,564,112 - -0.2
4,564,116 + +0.7
4,564,139 + IAI46_21530 0.11 +0.5
4,564,139 + IAI46_21530 0.11 +1.6
4,564,140 - IAI46_21530 0.11 -0.0
4,564,140 - IAI46_21530 0.11 -0.3
4,564,140 - IAI46_21530 0.11 +0.4
4,564,140 - IAI46_21530 0.11 -0.1
4,564,143 + IAI46_21530 0.11 -0.2
4,564,143 + IAI46_21530 0.11 -0.7
4,564,144 - IAI46_21530 0.11 -1.5
4,564,144 - IAI46_21530 0.11 +0.3
4,564,148 - IAI46_21530 0.11 +0.2
4,564,156 - IAI46_21530 0.11 -0.8
4,564,180 + IAI46_21530 0.12 -0.6
4,564,201 + IAI46_21530 0.13 -2.2
4,564,206 + IAI46_21530 0.13 -1.0
4,564,207 - IAI46_21530 0.13 +0.0
4,564,217 + IAI46_21530 0.13 +0.0
4,564,217 + IAI46_21530 0.13 +1.0
4,564,270 - IAI46_21530 0.15 +0.7
4,564,297 + IAI46_21530 0.16 -0.4
4,564,297 + IAI46_21530 0.16 +0.9
4,564,298 - IAI46_21530 0.16 +0.7
4,564,298 - IAI46_21530 0.16 -0.1
4,564,342 - IAI46_21530 0.17 +0.6
4,564,378 + IAI46_21530 0.18 -0.5
4,564,378 + IAI46_21530 0.18 +0.1
4,564,402 + IAI46_21530 0.19 -1.1
4,564,459 + IAI46_21530 0.21 +0.9
4,564,480 - IAI46_21530 0.22 +0.5
4,564,480 - IAI46_21530 0.22 +0.1
4,564,480 - IAI46_21530 0.22 -0.3
4,564,557 + IAI46_21530 0.24 -0.7
4,564,558 - IAI46_21530 0.24 +0.3
4,564,558 - IAI46_21530 0.24 -0.5
4,564,558 - IAI46_21530 0.24 -0.4
4,564,558 - IAI46_21530 0.24 +0.6
4,564,559 + IAI46_21530 0.24 +0.4
4,564,559 + IAI46_21530 0.24 +0.2
4,564,560 - IAI46_21530 0.24 -1.2
4,564,560 - IAI46_21530 0.24 +0.8
4,564,560 - IAI46_21530 0.24 +0.5
4,564,560 - IAI46_21530 0.24 +0.6
4,564,605 + IAI46_21530 0.26 +0.5
4,564,605 + IAI46_21530 0.26 +0.3
4,564,614 + IAI46_21530 0.26 +0.6
4,564,614 + IAI46_21530 0.26 -1.0

Or see this region's nucleotide sequence