Strain Fitness in Serratia liquefaciens MT49 around IAI46_19750

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19745 and IAI46_19750 overlap by 14 nucleotidesIAI46_19750 and IAI46_19755 are separated by 224 nucleotidesIAI46_19755 and IAI46_19760 are separated by 68 nucleotides IAI46_19745: IAI46_19745 - hypothetical protein, at 4,169,752 to 4,171,221 _19745 IAI46_19750: IAI46_19750 - MBL fold metallo-hydrolase, at 4,171,208 to 4,172,194 _19750 IAI46_19755: IAI46_19755 - hypothetical protein, at 4,172,419 to 4,172,877 _19755 IAI46_19760: IAI46_19760 - hypothetical protein, at 4,172,946 to 4,173,245 _19760 Position (kb) 4171 4172 4173Strain fitness (log2 ratio) -1 0 1 2at 4170.210 kb on - strand, within IAI46_19745at 4170.268 kb on - strand, within IAI46_19745at 4170.273 kb on - strand, within IAI46_19745at 4170.784 kb on - strand, within IAI46_19745at 4170.882 kb on + strand, within IAI46_19745at 4170.882 kb on + strand, within IAI46_19745at 4170.892 kb on - strand, within IAI46_19745at 4170.946 kb on - strand, within IAI46_19745at 4171.163 kb on - strandat 4171.167 kb on - strandat 4171.167 kb on - strandat 4171.167 kb on - strandat 4171.224 kb on + strandat 4171.229 kb on + strandat 4171.229 kb on + strandat 4171.252 kb on - strandat 4171.370 kb on - strand, within IAI46_19750at 4171.453 kb on + strand, within IAI46_19750at 4171.588 kb on - strand, within IAI46_19750at 4171.622 kb on - strand, within IAI46_19750at 4171.673 kb on - strand, within IAI46_19750at 4171.868 kb on - strand, within IAI46_19750at 4172.048 kb on - strand, within IAI46_19750at 4172.510 kb on + strand, within IAI46_19755at 4172.945 kb on + strandat 4173.062 kb on + strand, within IAI46_19760at 4173.122 kb on + strand, within IAI46_19760at 4173.130 kb on - strand, within IAI46_19760

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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4,170,210 - IAI46_19745 0.31 +1.4
4,170,268 - IAI46_19745 0.35 -0.4
4,170,273 - IAI46_19745 0.35 +0.8
4,170,784 - IAI46_19745 0.70 +0.4
4,170,882 + IAI46_19745 0.77 +0.5
4,170,882 + IAI46_19745 0.77 +0.8
4,170,892 - IAI46_19745 0.78 +0.6
4,170,946 - IAI46_19745 0.81 +0.1
4,171,163 - +0.3
4,171,167 - +0.1
4,171,167 - +0.5
4,171,167 - +0.1
4,171,224 + +0.5
4,171,229 + +1.9
4,171,229 + +1.6
4,171,252 - +0.3
4,171,370 - IAI46_19750 0.16 +0.8
4,171,453 + IAI46_19750 0.25 +0.6
4,171,588 - IAI46_19750 0.39 -0.0
4,171,622 - IAI46_19750 0.42 +0.8
4,171,673 - IAI46_19750 0.47 -0.7
4,171,868 - IAI46_19750 0.67 +0.3
4,172,048 - IAI46_19750 0.85 +0.4
4,172,510 + IAI46_19755 0.20 -0.6
4,172,945 + -0.1
4,173,062 + IAI46_19760 0.39 -1.1
4,173,122 + IAI46_19760 0.59 +0.2
4,173,130 - IAI46_19760 0.61 +0.8

Or see this region's nucleotide sequence