Strain Fitness in Serratia liquefaciens MT49 around IAI46_19605

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_19600 and IAI46_19605 are separated by 58 nucleotidesIAI46_19605 and IAI46_19610 overlap by 8 nucleotides IAI46_19600: IAI46_19600 - ATP-dependent RNA helicase SrmB, at 4,142,277 to 4,143,602 _19600 IAI46_19605: IAI46_19605 - ankyrin repeat domain-containing protein, at 4,143,661 to 4,144,416 _19605 IAI46_19610: IAI46_19610 - DUF2974 domain-containing protein, at 4,144,409 to 4,145,371 _19610 Position (kb) 4143 4144 4145Strain fitness (log2 ratio) -2 -1 0 1at 4142.694 kb on + strand, within IAI46_19600at 4142.696 kb on + strand, within IAI46_19600at 4142.697 kb on - strand, within IAI46_19600at 4142.820 kb on - strand, within IAI46_19600at 4142.934 kb on - strand, within IAI46_19600at 4142.952 kb on + strand, within IAI46_19600at 4142.952 kb on + strand, within IAI46_19600at 4142.952 kb on + strand, within IAI46_19600at 4142.956 kb on - strand, within IAI46_19600at 4142.971 kb on + strand, within IAI46_19600at 4142.971 kb on + strand, within IAI46_19600at 4142.972 kb on - strand, within IAI46_19600at 4142.978 kb on + strand, within IAI46_19600at 4143.266 kb on + strand, within IAI46_19600at 4143.267 kb on - strand, within IAI46_19600at 4143.267 kb on - strand, within IAI46_19600at 4143.270 kb on + strand, within IAI46_19600at 4143.270 kb on + strand, within IAI46_19600at 4143.270 kb on + strand, within IAI46_19600at 4143.271 kb on - strand, within IAI46_19600at 4143.600 kb on + strandat 4143.601 kb on - strandat 4143.652 kb on + strandat 4143.769 kb on + strand, within IAI46_19605at 4143.773 kb on + strand, within IAI46_19605at 4144.142 kb on - strand, within IAI46_19605at 4144.249 kb on - strand, within IAI46_19605at 4144.333 kb on - strand, within IAI46_19605at 4144.466 kb on - strandat 4144.620 kb on + strand, within IAI46_19610at 4144.621 kb on - strand, within IAI46_19610at 4144.915 kb on + strand, within IAI46_19610at 4144.916 kb on - strand, within IAI46_19610at 4144.944 kb on + strand, within IAI46_19610at 4144.944 kb on + strand, within IAI46_19610at 4144.944 kb on + strand, within IAI46_19610at 4144.944 kb on + strand, within IAI46_19610at 4144.944 kb on + strand, within IAI46_19610at 4144.944 kb on + strand, within IAI46_19610at 4144.944 kb on + strand, within IAI46_19610at 4144.945 kb on - strand, within IAI46_19610at 4144.945 kb on - strand, within IAI46_19610at 4144.962 kb on + strand, within IAI46_19610at 4144.962 kb on + strand, within IAI46_19610at 4144.963 kb on - strand, within IAI46_19610at 4144.963 kb on - strand, within IAI46_19610at 4145.110 kb on + strand, within IAI46_19610at 4145.110 kb on + strand, within IAI46_19610at 4145.110 kb on + strand, within IAI46_19610at 4145.110 kb on + strand, within IAI46_19610at 4145.111 kb on - strand, within IAI46_19610at 4145.111 kb on - strand, within IAI46_19610at 4145.111 kb on - strand, within IAI46_19610at 4145.111 kb on - strand, within IAI46_19610at 4145.111 kb on - strand, within IAI46_19610at 4145.113 kb on - strand, within IAI46_19610at 4145.113 kb on - strand, within IAI46_19610at 4145.113 kb on - strand, within IAI46_19610at 4145.224 kb on + strand, within IAI46_19610at 4145.225 kb on - strand, within IAI46_19610at 4145.272 kb on + strand, within IAI46_19610at 4145.305 kb on + strandat 4145.365 kb on + strandat 4145.365 kb on + strandat 4145.365 kb on + strandat 4145.366 kb on - strandat 4145.366 kb on - strandat 4145.389 kb on - strandat 4145.389 kb on - strandat 4145.394 kb on + strandat 4145.394 kb on + strandat 4145.395 kb on - strandat 4145.395 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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4,142,694 + IAI46_19600 0.31 +0.8
4,142,696 + IAI46_19600 0.32 -0.7
4,142,697 - IAI46_19600 0.32 -0.7
4,142,820 - IAI46_19600 0.41 +0.2
4,142,934 - IAI46_19600 0.50 -0.9
4,142,952 + IAI46_19600 0.51 -0.7
4,142,952 + IAI46_19600 0.51 -2.0
4,142,952 + IAI46_19600 0.51 -0.7
4,142,956 - IAI46_19600 0.51 -0.1
4,142,971 + IAI46_19600 0.52 -1.4
4,142,971 + IAI46_19600 0.52 +1.0
4,142,972 - IAI46_19600 0.52 -0.4
4,142,978 + IAI46_19600 0.53 -1.1
4,143,266 + IAI46_19600 0.75 +0.1
4,143,267 - IAI46_19600 0.75 -0.1
4,143,267 - IAI46_19600 0.75 -0.7
4,143,270 + IAI46_19600 0.75 -0.8
4,143,270 + IAI46_19600 0.75 -1.9
4,143,270 + IAI46_19600 0.75 -1.4
4,143,271 - IAI46_19600 0.75 +0.9
4,143,600 + -0.4
4,143,601 - -0.7
4,143,652 + +0.5
4,143,769 + IAI46_19605 0.14 +0.7
4,143,773 + IAI46_19605 0.15 -1.1
4,144,142 - IAI46_19605 0.64 -0.3
4,144,249 - IAI46_19605 0.78 -0.3
4,144,333 - IAI46_19605 0.89 -0.6
4,144,466 - -1.7
4,144,620 + IAI46_19610 0.22 -1.1
4,144,621 - IAI46_19610 0.22 +0.9
4,144,915 + IAI46_19610 0.53 -0.3
4,144,916 - IAI46_19610 0.53 +0.5
4,144,944 + IAI46_19610 0.56 +0.2
4,144,944 + IAI46_19610 0.56 +0.5
4,144,944 + IAI46_19610 0.56 +0.1
4,144,944 + IAI46_19610 0.56 -0.5
4,144,944 + IAI46_19610 0.56 +0.1
4,144,944 + IAI46_19610 0.56 +0.1
4,144,944 + IAI46_19610 0.56 -0.7
4,144,945 - IAI46_19610 0.56 +0.1
4,144,945 - IAI46_19610 0.56 +0.2
4,144,962 + IAI46_19610 0.57 +1.1
4,144,962 + IAI46_19610 0.57 +0.1
4,144,963 - IAI46_19610 0.58 -0.6
4,144,963 - IAI46_19610 0.58 -0.1
4,145,110 + IAI46_19610 0.73 +0.6
4,145,110 + IAI46_19610 0.73 -2.7
4,145,110 + IAI46_19610 0.73 +0.2
4,145,110 + IAI46_19610 0.73 +0.4
4,145,111 - IAI46_19610 0.73 -0.4
4,145,111 - IAI46_19610 0.73 -0.7
4,145,111 - IAI46_19610 0.73 +0.5
4,145,111 - IAI46_19610 0.73 -0.0
4,145,111 - IAI46_19610 0.73 +0.8
4,145,113 - IAI46_19610 0.73 +1.1
4,145,113 - IAI46_19610 0.73 +0.8
4,145,113 - IAI46_19610 0.73 +0.5
4,145,224 + IAI46_19610 0.85 +1.2
4,145,225 - IAI46_19610 0.85 -0.5
4,145,272 + IAI46_19610 0.90 -0.4
4,145,305 + +0.8
4,145,365 + -0.1
4,145,365 + +0.9
4,145,365 + +0.2
4,145,366 - +0.6
4,145,366 - -0.1
4,145,389 - +1.1
4,145,389 - +0.8
4,145,394 + +0.8
4,145,394 + -0.2
4,145,395 - -0.6
4,145,395 - -0.1

Or see this region's nucleotide sequence