Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_18700 and IAI46_18705 are separated by 393 nucleotides IAI46_18705 and IAI46_18710 are separated by 9 nucleotides
IAI46_18700: IAI46_18700 - TonB-dependent receptor, at 3,938,903 to 3,940,942
_18700
IAI46_18705: IAI46_18705 - YncE family protein, at 3,941,336 to 3,942,406
_18705
IAI46_18710: IAI46_18710 - TonB-dependent siderophore receptor, at 3,942,416 to 3,944,587
_18710
Position (kb)
3941
3942
3943 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3940.459 kb on - strand, within IAI46_18700 at 3940.471 kb on + strand, within IAI46_18700 at 3940.471 kb on + strand, within IAI46_18700 at 3940.472 kb on - strand, within IAI46_18700 at 3940.472 kb on - strand, within IAI46_18700 at 3940.552 kb on - strand, within IAI46_18700 at 3940.753 kb on + strand at 3940.753 kb on + strand at 3940.767 kb on + strand at 3940.893 kb on - strand at 3940.952 kb on + strand at 3940.953 kb on - strand at 3940.956 kb on - strand at 3941.015 kb on + strand at 3941.055 kb on + strand at 3941.112 kb on + strand at 3941.112 kb on + strand at 3941.477 kb on + strand, within IAI46_18705 at 3941.478 kb on - strand, within IAI46_18705 at 3941.567 kb on - strand, within IAI46_18705 at 3941.660 kb on + strand, within IAI46_18705 at 3941.660 kb on + strand, within IAI46_18705 at 3941.661 kb on - strand, within IAI46_18705 at 3941.661 kb on - strand, within IAI46_18705 at 3941.714 kb on - strand, within IAI46_18705 at 3941.714 kb on - strand, within IAI46_18705 at 3941.729 kb on - strand, within IAI46_18705 at 3941.810 kb on + strand, within IAI46_18705 at 3941.811 kb on - strand, within IAI46_18705 at 3941.811 kb on - strand, within IAI46_18705 at 3941.841 kb on + strand, within IAI46_18705 at 3941.841 kb on + strand, within IAI46_18705 at 3941.939 kb on - strand, within IAI46_18705 at 3941.942 kb on + strand, within IAI46_18705 at 3941.971 kb on + strand, within IAI46_18705 at 3941.993 kb on - strand, within IAI46_18705 at 3942.153 kb on + strand, within IAI46_18705 at 3942.175 kb on - strand, within IAI46_18705 at 3942.175 kb on - strand, within IAI46_18705 at 3942.175 kb on - strand, within IAI46_18705 at 3942.175 kb on - strand, within IAI46_18705 at 3942.175 kb on - strand, within IAI46_18705 at 3942.179 kb on - strand, within IAI46_18705 at 3942.200 kb on + strand, within IAI46_18705 at 3942.201 kb on - strand, within IAI46_18705 at 3942.251 kb on + strand, within IAI46_18705 at 3942.252 kb on - strand, within IAI46_18705 at 3942.252 kb on - strand, within IAI46_18705 at 3942.274 kb on + strand, within IAI46_18705 at 3942.290 kb on - strand, within IAI46_18705 at 3942.422 kb on - strand at 3942.427 kb on + strand at 3942.585 kb on - strand at 3942.631 kb on + strand at 3942.631 kb on + strand at 3942.631 kb on + strand at 3942.632 kb on - strand at 3942.748 kb on + strand, within IAI46_18710 at 3942.749 kb on - strand, within IAI46_18710 at 3942.794 kb on + strand, within IAI46_18710 at 3942.795 kb on - strand, within IAI46_18710 at 3942.800 kb on + strand, within IAI46_18710 at 3942.801 kb on - strand, within IAI46_18710 at 3942.801 kb on - strand, within IAI46_18710 at 3942.801 kb on - strand, within IAI46_18710 at 3942.808 kb on + strand, within IAI46_18710 at 3942.809 kb on - strand, within IAI46_18710 at 3942.809 kb on - strand, within IAI46_18710 at 3942.809 kb on - strand, within IAI46_18710 at 3942.814 kb on + strand, within IAI46_18710 at 3942.814 kb on + strand, within IAI46_18710 at 3943.017 kb on - strand, within IAI46_18710 at 3943.061 kb on - strand, within IAI46_18710 at 3943.061 kb on - strand, within IAI46_18710 at 3943.061 kb on - strand, within IAI46_18710 at 3943.199 kb on + strand, within IAI46_18710 at 3943.199 kb on + strand, within IAI46_18710 at 3943.200 kb on - strand, within IAI46_18710 at 3943.394 kb on + strand, within IAI46_18710 at 3943.394 kb on + strand, within IAI46_18710 at 3943.395 kb on - strand, within IAI46_18710
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 3,940,459 - IAI46_18700 0.76 -1.0 3,940,471 + IAI46_18700 0.77 +0.4 3,940,471 + IAI46_18700 0.77 +0.3 3,940,472 - IAI46_18700 0.77 +0.0 3,940,472 - IAI46_18700 0.77 -0.3 3,940,552 - IAI46_18700 0.81 +2.6 3,940,753 + -0.5 3,940,753 + +0.1 3,940,767 + -0.0 3,940,893 - -0.3 3,940,952 + -1.9 3,940,953 - +0.3 3,940,956 - +0.5 3,941,015 + -0.1 3,941,055 + +1.5 3,941,112 + +0.2 3,941,112 + -1.1 3,941,477 + IAI46_18705 0.13 -1.2 3,941,478 - IAI46_18705 0.13 -0.3 3,941,567 - IAI46_18705 0.22 +2.6 3,941,660 + IAI46_18705 0.30 -0.0 3,941,660 + IAI46_18705 0.30 +1.1 3,941,661 - IAI46_18705 0.30 +0.4 3,941,661 - IAI46_18705 0.30 -0.5 3,941,714 - IAI46_18705 0.35 +0.2 3,941,714 - IAI46_18705 0.35 +0.5 3,941,729 - IAI46_18705 0.37 +0.4 3,941,810 + IAI46_18705 0.44 -0.6 3,941,811 - IAI46_18705 0.44 +0.3 3,941,811 - IAI46_18705 0.44 -0.1 3,941,841 + IAI46_18705 0.47 -0.3 3,941,841 + IAI46_18705 0.47 +0.8 3,941,939 - IAI46_18705 0.56 -0.8 3,941,942 + IAI46_18705 0.57 -0.8 3,941,971 + IAI46_18705 0.59 +0.2 3,941,993 - IAI46_18705 0.61 +0.2 3,942,153 + IAI46_18705 0.76 -0.2 3,942,175 - IAI46_18705 0.78 +0.0 3,942,175 - IAI46_18705 0.78 -1.1 3,942,175 - IAI46_18705 0.78 -0.0 3,942,175 - IAI46_18705 0.78 -0.4 3,942,175 - IAI46_18705 0.78 -0.2 3,942,179 - IAI46_18705 0.79 -0.4 3,942,200 + IAI46_18705 0.81 +0.4 3,942,201 - IAI46_18705 0.81 -0.2 3,942,251 + IAI46_18705 0.85 -0.3 3,942,252 - IAI46_18705 0.86 +0.5 3,942,252 - IAI46_18705 0.86 -0.8 3,942,274 + IAI46_18705 0.88 -1.3 3,942,290 - IAI46_18705 0.89 -0.4 3,942,422 - +0.2 3,942,427 + +0.4 3,942,585 - +0.5 3,942,631 + +0.4 3,942,631 + -1.5 3,942,631 + -0.6 3,942,632 - +0.8 3,942,748 + IAI46_18710 0.15 -0.6 3,942,749 - IAI46_18710 0.15 +2.0 3,942,794 + IAI46_18710 0.17 +0.4 3,942,795 - IAI46_18710 0.17 +0.9 3,942,800 + IAI46_18710 0.18 +0.0 3,942,801 - IAI46_18710 0.18 -0.4 3,942,801 - IAI46_18710 0.18 -0.2 3,942,801 - IAI46_18710 0.18 +0.0 3,942,808 + IAI46_18710 0.18 +1.0 3,942,809 - IAI46_18710 0.18 +0.3 3,942,809 - IAI46_18710 0.18 +0.3 3,942,809 - IAI46_18710 0.18 +1.0 3,942,814 + IAI46_18710 0.18 +0.0 3,942,814 + IAI46_18710 0.18 +0.4 3,943,017 - IAI46_18710 0.28 +0.4 3,943,061 - IAI46_18710 0.30 +0.1 3,943,061 - IAI46_18710 0.30 +1.5 3,943,061 - IAI46_18710 0.30 +0.1 3,943,199 + IAI46_18710 0.36 -2.4 3,943,199 + IAI46_18710 0.36 +0.1 3,943,200 - IAI46_18710 0.36 -0.4 3,943,394 + IAI46_18710 0.45 -0.1 3,943,394 + IAI46_18710 0.45 +0.4 3,943,395 - IAI46_18710 0.45 +0.5
Or see this region's nucleotide sequence