Strain Fitness in Serratia liquefaciens MT49 around IAI46_18705

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18700 and IAI46_18705 are separated by 393 nucleotidesIAI46_18705 and IAI46_18710 are separated by 9 nucleotides IAI46_18700: IAI46_18700 - TonB-dependent receptor, at 3,938,903 to 3,940,942 _18700 IAI46_18705: IAI46_18705 - YncE family protein, at 3,941,336 to 3,942,406 _18705 IAI46_18710: IAI46_18710 - TonB-dependent siderophore receptor, at 3,942,416 to 3,944,587 _18710 Position (kb) 3941 3942 3943Strain fitness (log2 ratio) -2 -1 0 1 2at 3940.459 kb on - strand, within IAI46_18700at 3940.471 kb on + strand, within IAI46_18700at 3940.471 kb on + strand, within IAI46_18700at 3940.472 kb on - strand, within IAI46_18700at 3940.472 kb on - strand, within IAI46_18700at 3940.552 kb on - strand, within IAI46_18700at 3940.753 kb on + strandat 3940.753 kb on + strandat 3940.767 kb on + strandat 3940.893 kb on - strandat 3940.952 kb on + strandat 3940.953 kb on - strandat 3940.956 kb on - strandat 3941.015 kb on + strandat 3941.055 kb on + strandat 3941.112 kb on + strandat 3941.112 kb on + strandat 3941.477 kb on + strand, within IAI46_18705at 3941.478 kb on - strand, within IAI46_18705at 3941.567 kb on - strand, within IAI46_18705at 3941.660 kb on + strand, within IAI46_18705at 3941.660 kb on + strand, within IAI46_18705at 3941.661 kb on - strand, within IAI46_18705at 3941.661 kb on - strand, within IAI46_18705at 3941.714 kb on - strand, within IAI46_18705at 3941.714 kb on - strand, within IAI46_18705at 3941.729 kb on - strand, within IAI46_18705at 3941.810 kb on + strand, within IAI46_18705at 3941.811 kb on - strand, within IAI46_18705at 3941.811 kb on - strand, within IAI46_18705at 3941.841 kb on + strand, within IAI46_18705at 3941.841 kb on + strand, within IAI46_18705at 3941.939 kb on - strand, within IAI46_18705at 3941.942 kb on + strand, within IAI46_18705at 3941.971 kb on + strand, within IAI46_18705at 3941.993 kb on - strand, within IAI46_18705at 3942.153 kb on + strand, within IAI46_18705at 3942.175 kb on - strand, within IAI46_18705at 3942.175 kb on - strand, within IAI46_18705at 3942.175 kb on - strand, within IAI46_18705at 3942.175 kb on - strand, within IAI46_18705at 3942.175 kb on - strand, within IAI46_18705at 3942.179 kb on - strand, within IAI46_18705at 3942.200 kb on + strand, within IAI46_18705at 3942.201 kb on - strand, within IAI46_18705at 3942.251 kb on + strand, within IAI46_18705at 3942.252 kb on - strand, within IAI46_18705at 3942.252 kb on - strand, within IAI46_18705at 3942.274 kb on + strand, within IAI46_18705at 3942.290 kb on - strand, within IAI46_18705at 3942.422 kb on - strandat 3942.427 kb on + strandat 3942.585 kb on - strandat 3942.631 kb on + strandat 3942.631 kb on + strandat 3942.631 kb on + strandat 3942.632 kb on - strandat 3942.748 kb on + strand, within IAI46_18710at 3942.749 kb on - strand, within IAI46_18710at 3942.794 kb on + strand, within IAI46_18710at 3942.795 kb on - strand, within IAI46_18710at 3942.800 kb on + strand, within IAI46_18710at 3942.801 kb on - strand, within IAI46_18710at 3942.801 kb on - strand, within IAI46_18710at 3942.801 kb on - strand, within IAI46_18710at 3942.808 kb on + strand, within IAI46_18710at 3942.809 kb on - strand, within IAI46_18710at 3942.809 kb on - strand, within IAI46_18710at 3942.809 kb on - strand, within IAI46_18710at 3942.814 kb on + strand, within IAI46_18710at 3942.814 kb on + strand, within IAI46_18710at 3943.017 kb on - strand, within IAI46_18710at 3943.061 kb on - strand, within IAI46_18710at 3943.061 kb on - strand, within IAI46_18710at 3943.061 kb on - strand, within IAI46_18710at 3943.199 kb on + strand, within IAI46_18710at 3943.199 kb on + strand, within IAI46_18710at 3943.200 kb on - strand, within IAI46_18710at 3943.394 kb on + strand, within IAI46_18710at 3943.394 kb on + strand, within IAI46_18710at 3943.395 kb on - strand, within IAI46_18710

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,940,459 - IAI46_18700 0.76 -1.0
3,940,471 + IAI46_18700 0.77 +0.4
3,940,471 + IAI46_18700 0.77 +0.3
3,940,472 - IAI46_18700 0.77 +0.0
3,940,472 - IAI46_18700 0.77 -0.3
3,940,552 - IAI46_18700 0.81 +2.6
3,940,753 + -0.5
3,940,753 + +0.1
3,940,767 + -0.0
3,940,893 - -0.3
3,940,952 + -1.9
3,940,953 - +0.3
3,940,956 - +0.5
3,941,015 + -0.1
3,941,055 + +1.5
3,941,112 + +0.2
3,941,112 + -1.1
3,941,477 + IAI46_18705 0.13 -1.2
3,941,478 - IAI46_18705 0.13 -0.3
3,941,567 - IAI46_18705 0.22 +2.6
3,941,660 + IAI46_18705 0.30 -0.0
3,941,660 + IAI46_18705 0.30 +1.1
3,941,661 - IAI46_18705 0.30 +0.4
3,941,661 - IAI46_18705 0.30 -0.5
3,941,714 - IAI46_18705 0.35 +0.2
3,941,714 - IAI46_18705 0.35 +0.5
3,941,729 - IAI46_18705 0.37 +0.4
3,941,810 + IAI46_18705 0.44 -0.6
3,941,811 - IAI46_18705 0.44 +0.3
3,941,811 - IAI46_18705 0.44 -0.1
3,941,841 + IAI46_18705 0.47 -0.3
3,941,841 + IAI46_18705 0.47 +0.8
3,941,939 - IAI46_18705 0.56 -0.8
3,941,942 + IAI46_18705 0.57 -0.8
3,941,971 + IAI46_18705 0.59 +0.2
3,941,993 - IAI46_18705 0.61 +0.2
3,942,153 + IAI46_18705 0.76 -0.2
3,942,175 - IAI46_18705 0.78 +0.0
3,942,175 - IAI46_18705 0.78 -1.1
3,942,175 - IAI46_18705 0.78 -0.0
3,942,175 - IAI46_18705 0.78 -0.4
3,942,175 - IAI46_18705 0.78 -0.2
3,942,179 - IAI46_18705 0.79 -0.4
3,942,200 + IAI46_18705 0.81 +0.4
3,942,201 - IAI46_18705 0.81 -0.2
3,942,251 + IAI46_18705 0.85 -0.3
3,942,252 - IAI46_18705 0.86 +0.5
3,942,252 - IAI46_18705 0.86 -0.8
3,942,274 + IAI46_18705 0.88 -1.3
3,942,290 - IAI46_18705 0.89 -0.4
3,942,422 - +0.2
3,942,427 + +0.4
3,942,585 - +0.5
3,942,631 + +0.4
3,942,631 + -1.5
3,942,631 + -0.6
3,942,632 - +0.8
3,942,748 + IAI46_18710 0.15 -0.6
3,942,749 - IAI46_18710 0.15 +2.0
3,942,794 + IAI46_18710 0.17 +0.4
3,942,795 - IAI46_18710 0.17 +0.9
3,942,800 + IAI46_18710 0.18 +0.0
3,942,801 - IAI46_18710 0.18 -0.4
3,942,801 - IAI46_18710 0.18 -0.2
3,942,801 - IAI46_18710 0.18 +0.0
3,942,808 + IAI46_18710 0.18 +1.0
3,942,809 - IAI46_18710 0.18 +0.3
3,942,809 - IAI46_18710 0.18 +0.3
3,942,809 - IAI46_18710 0.18 +1.0
3,942,814 + IAI46_18710 0.18 +0.0
3,942,814 + IAI46_18710 0.18 +0.4
3,943,017 - IAI46_18710 0.28 +0.4
3,943,061 - IAI46_18710 0.30 +0.1
3,943,061 - IAI46_18710 0.30 +1.5
3,943,061 - IAI46_18710 0.30 +0.1
3,943,199 + IAI46_18710 0.36 -2.4
3,943,199 + IAI46_18710 0.36 +0.1
3,943,200 - IAI46_18710 0.36 -0.4
3,943,394 + IAI46_18710 0.45 -0.1
3,943,394 + IAI46_18710 0.45 +0.4
3,943,395 - IAI46_18710 0.45 +0.5

Or see this region's nucleotide sequence