Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_18690 and IAI46_18695 are separated by 269 nucleotides IAI46_18695 and IAI46_18700 are separated by 238 nucleotides
IAI46_18690: IAI46_18690 - multidrug efflux RND transporter permease AcrD, at 3,935,222 to 3,938,335
_18690
IAI46_18695: IAI46_18695 - protein YpfM, at 3,938,605 to 3,938,664
_18695
IAI46_18700: IAI46_18700 - TonB-dependent receptor, at 3,938,903 to 3,940,942
_18700
Position (kb)
3938
3939 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3937.646 kb on + strand, within IAI46_18690 at 3937.647 kb on - strand, within IAI46_18690 at 3937.672 kb on + strand, within IAI46_18690 at 3938.169 kb on + strand at 3938.298 kb on + strand at 3938.327 kb on - strand at 3938.327 kb on - strand at 3938.329 kb on - strand at 3938.338 kb on - strand at 3938.338 kb on - strand at 3938.436 kb on + strand at 3938.436 kb on + strand at 3938.436 kb on + strand at 3938.436 kb on + strand at 3938.436 kb on + strand at 3938.449 kb on + strand at 3938.454 kb on - strand at 3938.460 kb on + strand at 3938.460 kb on + strand at 3938.460 kb on + strand at 3938.461 kb on - strand at 3938.461 kb on - strand at 3938.483 kb on - strand at 3938.483 kb on - strand at 3938.491 kb on + strand at 3938.572 kb on + strand at 3938.572 kb on + strand at 3938.573 kb on - strand at 3938.587 kb on - strand at 3938.596 kb on - strand at 3938.610 kb on + strand at 3938.610 kb on + strand at 3938.610 kb on + strand at 3938.614 kb on + strand, within IAI46_18695 at 3938.614 kb on + strand, within IAI46_18695 at 3938.614 kb on + strand, within IAI46_18695 at 3938.615 kb on - strand, within IAI46_18695 at 3938.615 kb on - strand, within IAI46_18695 at 3938.685 kb on - strand at 3938.703 kb on + strand at 3938.703 kb on + strand at 3938.784 kb on + strand at 3938.784 kb on + strand at 3938.785 kb on - strand at 3938.785 kb on - strand at 3938.785 kb on - strand at 3938.789 kb on + strand at 3938.804 kb on - strand at 3938.809 kb on + strand at 3938.809 kb on + strand at 3938.842 kb on + strand at 3938.842 kb on + strand at 3938.842 kb on + strand at 3938.843 kb on - strand at 3938.847 kb on - strand at 3938.847 kb on - strand at 3938.847 kb on - strand at 3938.847 kb on - strand at 3938.890 kb on - strand at 3938.931 kb on + strand at 3938.931 kb on + strand at 3939.002 kb on - strand at 3939.002 kb on - strand at 3939.002 kb on - strand at 3939.003 kb on + strand at 3939.003 kb on + strand at 3939.004 kb on - strand at 3939.031 kb on + strand at 3939.042 kb on + strand at 3939.069 kb on + strand at 3939.070 kb on - strand at 3939.070 kb on - strand at 3939.078 kb on + strand at 3939.196 kb on - strand, within IAI46_18700 at 3939.250 kb on + strand, within IAI46_18700 at 3939.250 kb on + strand, within IAI46_18700 at 3939.251 kb on - strand, within IAI46_18700 at 3939.251 kb on - strand, within IAI46_18700 at 3939.253 kb on - strand, within IAI46_18700 at 3939.313 kb on - strand, within IAI46_18700 at 3939.340 kb on - strand, within IAI46_18700 at 3939.343 kb on + strand, within IAI46_18700 at 3939.344 kb on - strand, within IAI46_18700 at 3939.362 kb on - strand, within IAI46_18700 at 3939.363 kb on + strand, within IAI46_18700 at 3939.364 kb on - strand, within IAI46_18700 at 3939.409 kb on + strand, within IAI46_18700 at 3939.441 kb on + strand, within IAI46_18700 at 3939.442 kb on - strand, within IAI46_18700 at 3939.464 kb on + strand, within IAI46_18700 at 3939.555 kb on + strand, within IAI46_18700 at 3939.663 kb on - strand, within IAI46_18700
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 3,937,646 + IAI46_18690 0.78 +0.3 3,937,647 - IAI46_18690 0.78 -0.1 3,937,672 + IAI46_18690 0.79 +0.9 3,938,169 + +0.4 3,938,298 + -1.1 3,938,327 - +1.1 3,938,327 - +0.9 3,938,329 - -0.1 3,938,338 - +0.2 3,938,338 - -0.6 3,938,436 + -0.2 3,938,436 + +0.3 3,938,436 + +0.9 3,938,436 + +0.3 3,938,436 + +0.3 3,938,449 + +0.9 3,938,454 - +0.2 3,938,460 + +0.6 3,938,460 + -0.2 3,938,460 + +1.4 3,938,461 - +0.1 3,938,461 - +0.3 3,938,483 - +0.1 3,938,483 - +0.2 3,938,491 + +1.0 3,938,572 + +0.3 3,938,572 + -0.5 3,938,573 - -0.6 3,938,587 - +0.1 3,938,596 - +0.2 3,938,610 + -0.4 3,938,610 + +0.8 3,938,610 + +0.0 3,938,614 + IAI46_18695 0.15 -0.2 3,938,614 + IAI46_18695 0.15 -0.0 3,938,614 + IAI46_18695 0.15 +0.4 3,938,615 - IAI46_18695 0.17 -0.3 3,938,615 - IAI46_18695 0.17 -0.1 3,938,685 - -0.4 3,938,703 + -0.2 3,938,703 + -0.4 3,938,784 + -1.2 3,938,784 + -0.2 3,938,785 - -0.8 3,938,785 - +0.1 3,938,785 - -0.0 3,938,789 + -0.4 3,938,804 - -0.1 3,938,809 + -0.1 3,938,809 + -0.1 3,938,842 + +0.7 3,938,842 + -0.7 3,938,842 + -1.8 3,938,843 - -0.6 3,938,847 - +1.5 3,938,847 - +1.6 3,938,847 - +0.7 3,938,847 - -1.2 3,938,890 - +0.2 3,938,931 + -0.2 3,938,931 + -0.5 3,939,002 - -0.5 3,939,002 - +1.8 3,939,002 - +0.3 3,939,003 + -0.0 3,939,003 + +0.1 3,939,004 - +0.3 3,939,031 + +0.3 3,939,042 + +0.1 3,939,069 + +0.3 3,939,070 - +0.1 3,939,070 - -0.5 3,939,078 + -0.4 3,939,196 - IAI46_18700 0.14 +0.1 3,939,250 + IAI46_18700 0.17 +0.4 3,939,250 + IAI46_18700 0.17 -0.1 3,939,251 - IAI46_18700 0.17 +0.1 3,939,251 - IAI46_18700 0.17 -0.1 3,939,253 - IAI46_18700 0.17 -0.6 3,939,313 - IAI46_18700 0.20 +0.6 3,939,340 - IAI46_18700 0.21 -0.4 3,939,343 + IAI46_18700 0.22 -1.2 3,939,344 - IAI46_18700 0.22 -0.3 3,939,362 - IAI46_18700 0.23 -0.6 3,939,363 + IAI46_18700 0.23 +1.3 3,939,364 - IAI46_18700 0.23 +0.3 3,939,409 + IAI46_18700 0.25 +0.1 3,939,441 + IAI46_18700 0.26 -0.1 3,939,442 - IAI46_18700 0.26 +0.0 3,939,464 + IAI46_18700 0.28 +1.1 3,939,555 + IAI46_18700 0.32 -0.6 3,939,663 - IAI46_18700 0.37 -0.3
Or see this region's nucleotide sequence