Strain Fitness in Serratia liquefaciens MT49 around IAI46_18695

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18690 and IAI46_18695 are separated by 269 nucleotidesIAI46_18695 and IAI46_18700 are separated by 238 nucleotides IAI46_18690: IAI46_18690 - multidrug efflux RND transporter permease AcrD, at 3,935,222 to 3,938,335 _18690 IAI46_18695: IAI46_18695 - protein YpfM, at 3,938,605 to 3,938,664 _18695 IAI46_18700: IAI46_18700 - TonB-dependent receptor, at 3,938,903 to 3,940,942 _18700 Position (kb) 3938 3939Strain fitness (log2 ratio) -2 -1 0 1 2at 3937.646 kb on + strand, within IAI46_18690at 3937.647 kb on - strand, within IAI46_18690at 3937.672 kb on + strand, within IAI46_18690at 3938.169 kb on + strandat 3938.298 kb on + strandat 3938.327 kb on - strandat 3938.327 kb on - strandat 3938.329 kb on - strandat 3938.338 kb on - strandat 3938.338 kb on - strandat 3938.436 kb on + strandat 3938.436 kb on + strandat 3938.436 kb on + strandat 3938.436 kb on + strandat 3938.436 kb on + strandat 3938.449 kb on + strandat 3938.454 kb on - strandat 3938.460 kb on + strandat 3938.460 kb on + strandat 3938.460 kb on + strandat 3938.461 kb on - strandat 3938.461 kb on - strandat 3938.483 kb on - strandat 3938.483 kb on - strandat 3938.491 kb on + strandat 3938.572 kb on + strandat 3938.572 kb on + strandat 3938.573 kb on - strandat 3938.587 kb on - strandat 3938.596 kb on - strandat 3938.610 kb on + strandat 3938.610 kb on + strandat 3938.610 kb on + strandat 3938.614 kb on + strand, within IAI46_18695at 3938.614 kb on + strand, within IAI46_18695at 3938.614 kb on + strand, within IAI46_18695at 3938.615 kb on - strand, within IAI46_18695at 3938.615 kb on - strand, within IAI46_18695at 3938.685 kb on - strandat 3938.703 kb on + strandat 3938.703 kb on + strandat 3938.784 kb on + strandat 3938.784 kb on + strandat 3938.785 kb on - strandat 3938.785 kb on - strandat 3938.785 kb on - strandat 3938.789 kb on + strandat 3938.804 kb on - strandat 3938.809 kb on + strandat 3938.809 kb on + strandat 3938.842 kb on + strandat 3938.842 kb on + strandat 3938.842 kb on + strandat 3938.843 kb on - strandat 3938.847 kb on - strandat 3938.847 kb on - strandat 3938.847 kb on - strandat 3938.847 kb on - strandat 3938.890 kb on - strandat 3938.931 kb on + strandat 3938.931 kb on + strandat 3939.002 kb on - strandat 3939.002 kb on - strandat 3939.002 kb on - strandat 3939.003 kb on + strandat 3939.003 kb on + strandat 3939.004 kb on - strandat 3939.031 kb on + strandat 3939.042 kb on + strandat 3939.069 kb on + strandat 3939.070 kb on - strandat 3939.070 kb on - strandat 3939.078 kb on + strandat 3939.196 kb on - strand, within IAI46_18700at 3939.250 kb on + strand, within IAI46_18700at 3939.250 kb on + strand, within IAI46_18700at 3939.251 kb on - strand, within IAI46_18700at 3939.251 kb on - strand, within IAI46_18700at 3939.253 kb on - strand, within IAI46_18700at 3939.313 kb on - strand, within IAI46_18700at 3939.340 kb on - strand, within IAI46_18700at 3939.343 kb on + strand, within IAI46_18700at 3939.344 kb on - strand, within IAI46_18700at 3939.362 kb on - strand, within IAI46_18700at 3939.363 kb on + strand, within IAI46_18700at 3939.364 kb on - strand, within IAI46_18700at 3939.409 kb on + strand, within IAI46_18700at 3939.441 kb on + strand, within IAI46_18700at 3939.442 kb on - strand, within IAI46_18700at 3939.464 kb on + strand, within IAI46_18700at 3939.555 kb on + strand, within IAI46_18700at 3939.663 kb on - strand, within IAI46_18700

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,937,646 + IAI46_18690 0.78 +0.3
3,937,647 - IAI46_18690 0.78 -0.1
3,937,672 + IAI46_18690 0.79 +0.9
3,938,169 + +0.4
3,938,298 + -1.1
3,938,327 - +1.1
3,938,327 - +0.9
3,938,329 - -0.1
3,938,338 - +0.2
3,938,338 - -0.6
3,938,436 + -0.2
3,938,436 + +0.3
3,938,436 + +0.9
3,938,436 + +0.3
3,938,436 + +0.3
3,938,449 + +0.9
3,938,454 - +0.2
3,938,460 + +0.6
3,938,460 + -0.2
3,938,460 + +1.4
3,938,461 - +0.1
3,938,461 - +0.3
3,938,483 - +0.1
3,938,483 - +0.2
3,938,491 + +1.0
3,938,572 + +0.3
3,938,572 + -0.5
3,938,573 - -0.6
3,938,587 - +0.1
3,938,596 - +0.2
3,938,610 + -0.4
3,938,610 + +0.8
3,938,610 + +0.0
3,938,614 + IAI46_18695 0.15 -0.2
3,938,614 + IAI46_18695 0.15 -0.0
3,938,614 + IAI46_18695 0.15 +0.4
3,938,615 - IAI46_18695 0.17 -0.3
3,938,615 - IAI46_18695 0.17 -0.1
3,938,685 - -0.4
3,938,703 + -0.2
3,938,703 + -0.4
3,938,784 + -1.2
3,938,784 + -0.2
3,938,785 - -0.8
3,938,785 - +0.1
3,938,785 - -0.0
3,938,789 + -0.4
3,938,804 - -0.1
3,938,809 + -0.1
3,938,809 + -0.1
3,938,842 + +0.7
3,938,842 + -0.7
3,938,842 + -1.8
3,938,843 - -0.6
3,938,847 - +1.5
3,938,847 - +1.6
3,938,847 - +0.7
3,938,847 - -1.2
3,938,890 - +0.2
3,938,931 + -0.2
3,938,931 + -0.5
3,939,002 - -0.5
3,939,002 - +1.8
3,939,002 - +0.3
3,939,003 + -0.0
3,939,003 + +0.1
3,939,004 - +0.3
3,939,031 + +0.3
3,939,042 + +0.1
3,939,069 + +0.3
3,939,070 - +0.1
3,939,070 - -0.5
3,939,078 + -0.4
3,939,196 - IAI46_18700 0.14 +0.1
3,939,250 + IAI46_18700 0.17 +0.4
3,939,250 + IAI46_18700 0.17 -0.1
3,939,251 - IAI46_18700 0.17 +0.1
3,939,251 - IAI46_18700 0.17 -0.1
3,939,253 - IAI46_18700 0.17 -0.6
3,939,313 - IAI46_18700 0.20 +0.6
3,939,340 - IAI46_18700 0.21 -0.4
3,939,343 + IAI46_18700 0.22 -1.2
3,939,344 - IAI46_18700 0.22 -0.3
3,939,362 - IAI46_18700 0.23 -0.6
3,939,363 + IAI46_18700 0.23 +1.3
3,939,364 - IAI46_18700 0.23 +0.3
3,939,409 + IAI46_18700 0.25 +0.1
3,939,441 + IAI46_18700 0.26 -0.1
3,939,442 - IAI46_18700 0.26 +0.0
3,939,464 + IAI46_18700 0.28 +1.1
3,939,555 + IAI46_18700 0.32 -0.6
3,939,663 - IAI46_18700 0.37 -0.3

Or see this region's nucleotide sequence