Strain Fitness in Serratia liquefaciens MT49 around IAI46_18420

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18415 and IAI46_18420 are separated by 96 nucleotidesIAI46_18420 and IAI46_18425 are separated by 34 nucleotidesIAI46_18425 and IAI46_18430 overlap by 1 nucleotides IAI46_18415: IAI46_18415 - LysR family transcriptional regulator, at 3,877,483 to 3,878,388 _18415 IAI46_18420: IAI46_18420 - bile acid:sodium symporter, at 3,878,485 to 3,879,477 _18420 IAI46_18425: IAI46_18425 - DUF3820 family protein, at 3,879,512 to 3,879,727 _18425 IAI46_18430: IAI46_18430 - NAD-dependent DNA ligase LigA, at 3,879,727 to 3,881,748 _18430 Position (kb) 3878 3879 3880Strain fitness (log2 ratio) -1 0 1at 3877.487 kb on + strandat 3877.488 kb on - strandat 3877.640 kb on - strand, within IAI46_18415at 3877.695 kb on + strand, within IAI46_18415at 3877.735 kb on + strand, within IAI46_18415at 3877.735 kb on + strand, within IAI46_18415at 3877.736 kb on - strand, within IAI46_18415at 3877.736 kb on - strand, within IAI46_18415at 3877.736 kb on - strand, within IAI46_18415at 3877.736 kb on - strand, within IAI46_18415at 3877.736 kb on - strand, within IAI46_18415at 3877.745 kb on - strand, within IAI46_18415at 3877.811 kb on + strand, within IAI46_18415at 3877.811 kb on + strand, within IAI46_18415at 3877.812 kb on - strand, within IAI46_18415at 3877.812 kb on - strand, within IAI46_18415at 3877.888 kb on - strand, within IAI46_18415at 3878.773 kb on + strand, within IAI46_18420at 3878.785 kb on - strand, within IAI46_18420at 3878.785 kb on - strand, within IAI46_18420at 3878.788 kb on + strand, within IAI46_18420at 3878.788 kb on + strand, within IAI46_18420at 3878.789 kb on - strand, within IAI46_18420at 3878.789 kb on - strand, within IAI46_18420at 3878.994 kb on - strand, within IAI46_18420at 3878.994 kb on - strand, within IAI46_18420at 3879.171 kb on + strand, within IAI46_18420at 3879.223 kb on + strand, within IAI46_18420at 3879.223 kb on + strand, within IAI46_18420at 3879.223 kb on + strand, within IAI46_18420at 3879.224 kb on - strand, within IAI46_18420at 3879.224 kb on - strand, within IAI46_18420at 3879.224 kb on - strand, within IAI46_18420at 3879.247 kb on - strand, within IAI46_18420at 3879.250 kb on - strand, within IAI46_18420at 3879.351 kb on + strand, within IAI46_18420at 3879.351 kb on + strand, within IAI46_18420at 3879.351 kb on + strand, within IAI46_18420at 3879.352 kb on - strand, within IAI46_18420at 3879.383 kb on + strandat 3879.636 kb on + strand, within IAI46_18425at 3879.673 kb on - strand, within IAI46_18425

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,877,487 + +0.9
3,877,488 - -0.7
3,877,640 - IAI46_18415 0.17 -0.2
3,877,695 + IAI46_18415 0.23 -0.4
3,877,735 + IAI46_18415 0.28 -0.6
3,877,735 + IAI46_18415 0.28 +0.5
3,877,736 - IAI46_18415 0.28 +0.2
3,877,736 - IAI46_18415 0.28 -1.2
3,877,736 - IAI46_18415 0.28 -0.0
3,877,736 - IAI46_18415 0.28 -0.5
3,877,736 - IAI46_18415 0.28 -0.5
3,877,745 - IAI46_18415 0.29 +0.1
3,877,811 + IAI46_18415 0.36 -0.3
3,877,811 + IAI46_18415 0.36 +0.4
3,877,812 - IAI46_18415 0.36 +0.9
3,877,812 - IAI46_18415 0.36 -0.5
3,877,888 - IAI46_18415 0.45 -0.3
3,878,773 + IAI46_18420 0.29 +1.4
3,878,785 - IAI46_18420 0.30 -0.4
3,878,785 - IAI46_18420 0.30 +1.3
3,878,788 + IAI46_18420 0.31 +0.4
3,878,788 + IAI46_18420 0.31 +1.1
3,878,789 - IAI46_18420 0.31 +0.5
3,878,789 - IAI46_18420 0.31 +0.1
3,878,994 - IAI46_18420 0.51 -0.0
3,878,994 - IAI46_18420 0.51 -0.2
3,879,171 + IAI46_18420 0.69 +0.8
3,879,223 + IAI46_18420 0.74 +0.2
3,879,223 + IAI46_18420 0.74 +0.6
3,879,223 + IAI46_18420 0.74 +0.7
3,879,224 - IAI46_18420 0.74 +1.1
3,879,224 - IAI46_18420 0.74 +0.4
3,879,224 - IAI46_18420 0.74 +1.1
3,879,247 - IAI46_18420 0.77 +0.1
3,879,250 - IAI46_18420 0.77 +0.3
3,879,351 + IAI46_18420 0.87 +0.6
3,879,351 + IAI46_18420 0.87 +1.3
3,879,351 + IAI46_18420 0.87 -0.2
3,879,352 - IAI46_18420 0.87 -1.0
3,879,383 + +1.2
3,879,636 + IAI46_18425 0.57 -0.8
3,879,673 - IAI46_18425 0.75 -0.7

Or see this region's nucleotide sequence