Strain Fitness in Serratia liquefaciens MT49 around IAI46_17225

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17220 and IAI46_17225 are separated by 145 nucleotidesIAI46_17225 and IAI46_17230 are separated by 56 nucleotides IAI46_17220: IAI46_17220 - YeiH family putative sulfate export transporter, at 3,614,213 to 3,615,301 _17220 IAI46_17225: IAI46_17225 - deoxyribonuclease IV, at 3,615,447 to 3,616,286 _17225 IAI46_17230: IAI46_17230 - PTS fructose transporter subunit IIBC, at 3,616,343 to 3,618,031 _17230 Position (kb) 3615 3616 3617Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3614.470 kb on - strand, within IAI46_17220at 3614.485 kb on + strand, within IAI46_17220at 3614.486 kb on - strand, within IAI46_17220at 3614.529 kb on + strand, within IAI46_17220at 3614.599 kb on + strand, within IAI46_17220at 3614.731 kb on - strand, within IAI46_17220at 3614.772 kb on - strand, within IAI46_17220at 3614.784 kb on - strand, within IAI46_17220at 3614.981 kb on + strand, within IAI46_17220at 3614.982 kb on - strand, within IAI46_17220at 3614.982 kb on - strand, within IAI46_17220at 3615.068 kb on - strand, within IAI46_17220at 3615.140 kb on - strand, within IAI46_17220at 3615.365 kb on - strandat 3615.407 kb on - strandat 3615.622 kb on - strand, within IAI46_17225at 3615.660 kb on + strand, within IAI46_17225at 3615.660 kb on + strand, within IAI46_17225at 3615.660 kb on + strand, within IAI46_17225at 3615.660 kb on + strand, within IAI46_17225at 3615.661 kb on - strand, within IAI46_17225at 3615.661 kb on - strand, within IAI46_17225at 3615.661 kb on - strand, within IAI46_17225at 3616.077 kb on + strand, within IAI46_17225at 3616.077 kb on + strand, within IAI46_17225at 3616.078 kb on - strand, within IAI46_17225at 3616.174 kb on + strand, within IAI46_17225at 3616.183 kb on - strand, within IAI46_17225at 3616.184 kb on + strand, within IAI46_17225at 3616.184 kb on + strand, within IAI46_17225at 3616.184 kb on + strand, within IAI46_17225at 3616.184 kb on + strand, within IAI46_17225at 3616.235 kb on - strandat 3616.284 kb on + strandat 3616.285 kb on - strandat 3616.389 kb on + strandat 3616.390 kb on - strandat 3616.390 kb on - strandat 3616.390 kb on - strandat 3616.390 kb on - strandat 3616.435 kb on - strandat 3616.435 kb on - strandat 3616.612 kb on + strand, within IAI46_17230at 3616.685 kb on + strand, within IAI46_17230at 3616.721 kb on - strand, within IAI46_17230at 3616.721 kb on - strand, within IAI46_17230at 3616.733 kb on - strand, within IAI46_17230at 3616.752 kb on + strand, within IAI46_17230at 3616.753 kb on - strand, within IAI46_17230at 3616.753 kb on - strand, within IAI46_17230at 3616.754 kb on + strand, within IAI46_17230at 3616.755 kb on - strand, within IAI46_17230at 3616.788 kb on + strand, within IAI46_17230at 3617.005 kb on + strand, within IAI46_17230at 3617.123 kb on + strand, within IAI46_17230at 3617.168 kb on - strand, within IAI46_17230

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,614,470 - IAI46_17220 0.24 +0.0
3,614,485 + IAI46_17220 0.25 +1.7
3,614,486 - IAI46_17220 0.25 +0.8
3,614,529 + IAI46_17220 0.29 +0.6
3,614,599 + IAI46_17220 0.35 +0.2
3,614,731 - IAI46_17220 0.48 +1.3
3,614,772 - IAI46_17220 0.51 -2.0
3,614,784 - IAI46_17220 0.52 +0.3
3,614,981 + IAI46_17220 0.71 -0.5
3,614,982 - IAI46_17220 0.71 +0.5
3,614,982 - IAI46_17220 0.71 -0.4
3,615,068 - IAI46_17220 0.79 -0.3
3,615,140 - IAI46_17220 0.85 -0.9
3,615,365 - +0.3
3,615,407 - +0.9
3,615,622 - IAI46_17225 0.21 +0.8
3,615,660 + IAI46_17225 0.25 -0.6
3,615,660 + IAI46_17225 0.25 +0.1
3,615,660 + IAI46_17225 0.25 +0.6
3,615,660 + IAI46_17225 0.25 -0.6
3,615,661 - IAI46_17225 0.25 -0.5
3,615,661 - IAI46_17225 0.25 +0.1
3,615,661 - IAI46_17225 0.25 +0.7
3,616,077 + IAI46_17225 0.75 -2.8
3,616,077 + IAI46_17225 0.75 -1.0
3,616,078 - IAI46_17225 0.75 +1.2
3,616,174 + IAI46_17225 0.87 -0.1
3,616,183 - IAI46_17225 0.88 -0.1
3,616,184 + IAI46_17225 0.88 -0.6
3,616,184 + IAI46_17225 0.88 +0.4
3,616,184 + IAI46_17225 0.88 +0.7
3,616,184 + IAI46_17225 0.88 +1.5
3,616,235 - +0.3
3,616,284 + +0.3
3,616,285 - +0.7
3,616,389 + -0.4
3,616,390 - -0.3
3,616,390 - +0.4
3,616,390 - +0.8
3,616,390 - +0.2
3,616,435 - -0.2
3,616,435 - +0.7
3,616,612 + IAI46_17230 0.16 +0.9
3,616,685 + IAI46_17230 0.20 +1.2
3,616,721 - IAI46_17230 0.22 -0.4
3,616,721 - IAI46_17230 0.22 +1.8
3,616,733 - IAI46_17230 0.23 -0.5
3,616,752 + IAI46_17230 0.24 +0.5
3,616,753 - IAI46_17230 0.24 +0.9
3,616,753 - IAI46_17230 0.24 -0.6
3,616,754 + IAI46_17230 0.24 -0.2
3,616,755 - IAI46_17230 0.24 -1.2
3,616,788 + IAI46_17230 0.26 +0.7
3,617,005 + IAI46_17230 0.39 +1.3
3,617,123 + IAI46_17230 0.46 -0.9
3,617,168 - IAI46_17230 0.49 +0.2

Or see this region's nucleotide sequence