Strain Fitness in Serratia liquefaciens MT49 around IAI46_17125

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17120 and IAI46_17125 are separated by 99 nucleotidesIAI46_17125 and IAI46_17130 are separated by 214 nucleotides IAI46_17120: IAI46_17120 - FUSC family protein, at 3,590,167 to 3,591,234 _17120 IAI46_17125: IAI46_17125 - N-acetylmuramoyl-L-alanine amidase, at 3,591,334 to 3,592,101 _17125 IAI46_17130: IAI46_17130 - helix-turn-helix transcriptional regulator, at 3,592,316 to 3,593,062 _17130 Position (kb) 3591 3592 3593Strain fitness (log2 ratio) -2 -1 0 1 2at 3590.384 kb on - strand, within IAI46_17120at 3590.454 kb on + strand, within IAI46_17120at 3590.454 kb on + strand, within IAI46_17120at 3590.455 kb on - strand, within IAI46_17120at 3590.481 kb on - strand, within IAI46_17120at 3590.506 kb on - strand, within IAI46_17120at 3590.610 kb on + strand, within IAI46_17120at 3590.610 kb on + strand, within IAI46_17120at 3590.611 kb on - strand, within IAI46_17120at 3590.611 kb on - strand, within IAI46_17120at 3590.653 kb on + strand, within IAI46_17120at 3590.654 kb on - strand, within IAI46_17120at 3590.654 kb on - strand, within IAI46_17120at 3590.654 kb on - strand, within IAI46_17120at 3590.654 kb on - strand, within IAI46_17120at 3590.659 kb on - strand, within IAI46_17120at 3590.672 kb on + strand, within IAI46_17120at 3590.681 kb on + strand, within IAI46_17120at 3590.697 kb on + strand, within IAI46_17120at 3590.698 kb on - strand, within IAI46_17120at 3590.733 kb on + strand, within IAI46_17120at 3590.733 kb on + strand, within IAI46_17120at 3590.823 kb on + strand, within IAI46_17120at 3590.823 kb on + strand, within IAI46_17120at 3590.882 kb on + strand, within IAI46_17120at 3590.882 kb on + strand, within IAI46_17120at 3590.883 kb on - strand, within IAI46_17120at 3590.907 kb on - strand, within IAI46_17120at 3590.960 kb on + strand, within IAI46_17120at 3590.960 kb on + strand, within IAI46_17120at 3591.004 kb on + strand, within IAI46_17120at 3591.084 kb on + strand, within IAI46_17120at 3591.215 kb on - strandat 3591.335 kb on + strandat 3591.402 kb on - strandat 3591.450 kb on - strand, within IAI46_17125at 3591.500 kb on - strand, within IAI46_17125at 3591.522 kb on + strand, within IAI46_17125at 3591.522 kb on + strand, within IAI46_17125at 3591.522 kb on + strand, within IAI46_17125at 3591.523 kb on - strand, within IAI46_17125at 3591.523 kb on - strand, within IAI46_17125at 3591.523 kb on - strand, within IAI46_17125at 3591.542 kb on + strand, within IAI46_17125at 3591.578 kb on + strand, within IAI46_17125at 3591.578 kb on + strand, within IAI46_17125at 3591.932 kb on + strand, within IAI46_17125at 3591.932 kb on + strand, within IAI46_17125at 3591.932 kb on + strand, within IAI46_17125at 3591.932 kb on + strand, within IAI46_17125at 3591.933 kb on - strand, within IAI46_17125at 3591.933 kb on - strand, within IAI46_17125at 3591.933 kb on - strand, within IAI46_17125at 3591.962 kb on + strand, within IAI46_17125at 3592.024 kb on - strand, within IAI46_17125at 3592.025 kb on + strandat 3592.025 kb on + strandat 3592.026 kb on - strandat 3592.026 kb on - strandat 3592.085 kb on + strandat 3592.085 kb on + strandat 3592.092 kb on + strandat 3592.104 kb on + strandat 3592.145 kb on - strandat 3592.145 kb on - strandat 3592.157 kb on + strandat 3592.158 kb on - strandat 3592.197 kb on - strandat 3592.333 kb on - strandat 3592.342 kb on + strandat 3592.367 kb on + strandat 3592.745 kb on + strand, within IAI46_17130at 3592.745 kb on + strand, within IAI46_17130at 3592.745 kb on + strand, within IAI46_17130at 3592.745 kb on + strand, within IAI46_17130at 3592.858 kb on + strand, within IAI46_17130at 3592.858 kb on + strand, within IAI46_17130at 3593.060 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,590,384 - IAI46_17120 0.20 -0.1
3,590,454 + IAI46_17120 0.27 -0.4
3,590,454 + IAI46_17120 0.27 -0.9
3,590,455 - IAI46_17120 0.27 +0.2
3,590,481 - IAI46_17120 0.29 -1.2
3,590,506 - IAI46_17120 0.32 -0.7
3,590,610 + IAI46_17120 0.41 -0.0
3,590,610 + IAI46_17120 0.41 +0.6
3,590,611 - IAI46_17120 0.42 -0.5
3,590,611 - IAI46_17120 0.42 -1.9
3,590,653 + IAI46_17120 0.46 -0.8
3,590,654 - IAI46_17120 0.46 +0.6
3,590,654 - IAI46_17120 0.46 -1.0
3,590,654 - IAI46_17120 0.46 -1.4
3,590,654 - IAI46_17120 0.46 +0.7
3,590,659 - IAI46_17120 0.46 +0.3
3,590,672 + IAI46_17120 0.47 -0.1
3,590,681 + IAI46_17120 0.48 -0.2
3,590,697 + IAI46_17120 0.50 +0.4
3,590,698 - IAI46_17120 0.50 -0.5
3,590,733 + IAI46_17120 0.53 -0.3
3,590,733 + IAI46_17120 0.53 -0.6
3,590,823 + IAI46_17120 0.61 -0.5
3,590,823 + IAI46_17120 0.61 +0.6
3,590,882 + IAI46_17120 0.67 -1.0
3,590,882 + IAI46_17120 0.67 +0.3
3,590,883 - IAI46_17120 0.67 +0.4
3,590,907 - IAI46_17120 0.69 +0.3
3,590,960 + IAI46_17120 0.74 -0.2
3,590,960 + IAI46_17120 0.74 -0.2
3,591,004 + IAI46_17120 0.78 +1.2
3,591,084 + IAI46_17120 0.86 -0.2
3,591,215 - -1.7
3,591,335 + +0.8
3,591,402 - +0.3
3,591,450 - IAI46_17125 0.15 +0.9
3,591,500 - IAI46_17125 0.22 +0.2
3,591,522 + IAI46_17125 0.24 -0.3
3,591,522 + IAI46_17125 0.24 +0.8
3,591,522 + IAI46_17125 0.24 -0.5
3,591,523 - IAI46_17125 0.25 -0.5
3,591,523 - IAI46_17125 0.25 +0.1
3,591,523 - IAI46_17125 0.25 +0.8
3,591,542 + IAI46_17125 0.27 +0.5
3,591,578 + IAI46_17125 0.32 +0.3
3,591,578 + IAI46_17125 0.32 +0.8
3,591,932 + IAI46_17125 0.78 -0.0
3,591,932 + IAI46_17125 0.78 +0.1
3,591,932 + IAI46_17125 0.78 +1.1
3,591,932 + IAI46_17125 0.78 -0.8
3,591,933 - IAI46_17125 0.78 -1.9
3,591,933 - IAI46_17125 0.78 +0.8
3,591,933 - IAI46_17125 0.78 +0.6
3,591,962 + IAI46_17125 0.82 -0.6
3,592,024 - IAI46_17125 0.90 -0.5
3,592,025 + -0.8
3,592,025 + +0.4
3,592,026 - +0.7
3,592,026 - -0.4
3,592,085 + -0.9
3,592,085 + -0.6
3,592,092 + -0.7
3,592,104 + +0.9
3,592,145 - +0.6
3,592,145 - -0.5
3,592,157 + +1.8
3,592,158 - -1.5
3,592,197 - +0.1
3,592,333 - -0.2
3,592,342 + +0.6
3,592,367 + +0.4
3,592,745 + IAI46_17130 0.57 -0.3
3,592,745 + IAI46_17130 0.57 +0.3
3,592,745 + IAI46_17130 0.57 +1.2
3,592,745 + IAI46_17130 0.57 +0.3
3,592,858 + IAI46_17130 0.73 +1.1
3,592,858 + IAI46_17130 0.73 +0.5
3,593,060 + +0.3

Or see this region's nucleotide sequence