Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_16360 and IAI46_16365 are separated by 9 nucleotides IAI46_16365 and IAI46_16370 are separated by 14 nucleotides IAI46_16370 and IAI46_16375 are separated by 9 nucleotides IAI46_16375 and IAI46_16380 are separated by 3 nucleotides
IAI46_16360: IAI46_16360 - phenylacetate-CoA oxygenase subunit PaaC, at 3,428,597 to 3,429,358
_16360
IAI46_16365: IAI46_16365 - phenylacetate-CoA oxygenase subunit PaaJ, at 3,429,368 to 3,429,865
_16365
IAI46_16370: IAI46_16370 - phenylacetate-CoA oxygenase/reductase subunit PaaK, at 3,429,880 to 3,430,938
_16370
IAI46_16375: IAI46_16375 - 2,3-dehydroadipyl-CoA hydratase, at 3,430,948 to 3,431,721
_16375
IAI46_16380: IAI46_16380 - 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase, at 3,431,725 to 3,432,516
_16380
Position (kb)
3429
3430
3431 Strain fitness (log2 ratio)
-1
0
1 at 3428.918 kb on + strand, within IAI46_16360 at 3429.005 kb on + strand, within IAI46_16360 at 3429.367 kb on + strand at 3429.530 kb on + strand, within IAI46_16365 at 3429.675 kb on + strand, within IAI46_16365 at 3429.710 kb on - strand, within IAI46_16365 at 3429.864 kb on - strand at 3429.864 kb on - strand at 3429.938 kb on + strand at 3429.939 kb on - strand at 3429.942 kb on + strand at 3429.942 kb on + strand at 3429.942 kb on + strand at 3429.942 kb on + strand at 3429.942 kb on + strand at 3429.943 kb on - strand at 3429.943 kb on - strand at 3429.943 kb on - strand at 3429.985 kb on + strand at 3430.011 kb on - strand, within IAI46_16370 at 3430.223 kb on - strand, within IAI46_16370 at 3430.508 kb on - strand, within IAI46_16370 at 3430.508 kb on - strand, within IAI46_16370 at 3430.508 kb on - strand, within IAI46_16370 at 3430.521 kb on + strand, within IAI46_16370 at 3430.521 kb on + strand, within IAI46_16370 at 3430.521 kb on + strand, within IAI46_16370 at 3430.611 kb on + strand, within IAI46_16370 at 3430.612 kb on - strand, within IAI46_16370 at 3430.768 kb on + strand, within IAI46_16370 at 3430.812 kb on - strand, within IAI46_16370 at 3430.843 kb on + strand at 3430.876 kb on + strand at 3430.880 kb on + strand at 3430.880 kb on + strand at 3430.881 kb on - strand at 3430.934 kb on + strand at 3430.935 kb on - strand at 3430.936 kb on + strand at 3430.936 kb on + strand at 3430.937 kb on - strand at 3430.937 kb on - strand at 3431.059 kb on + strand, within IAI46_16375 at 3431.102 kb on + strand, within IAI46_16375 at 3431.229 kb on + strand, within IAI46_16375 at 3431.707 kb on + strand at 3431.802 kb on + strand at 3431.802 kb on + strand at 3431.870 kb on + strand, within IAI46_16380 at 3431.870 kb on + strand, within IAI46_16380
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 3,428,918 + IAI46_16360 0.42 +0.7 3,429,005 + IAI46_16360 0.54 -0.4 3,429,367 + -0.2 3,429,530 + IAI46_16365 0.33 -1.3 3,429,675 + IAI46_16365 0.62 -0.1 3,429,710 - IAI46_16365 0.69 +0.7 3,429,864 - +0.2 3,429,864 - -0.0 3,429,938 + -0.6 3,429,939 - +0.9 3,429,942 + +0.3 3,429,942 + +0.2 3,429,942 + -0.3 3,429,942 + -0.7 3,429,942 + +0.5 3,429,943 - -0.6 3,429,943 - -0.3 3,429,943 - +0.0 3,429,985 + -0.1 3,430,011 - IAI46_16370 0.12 -0.3 3,430,223 - IAI46_16370 0.32 -0.2 3,430,508 - IAI46_16370 0.59 -0.6 3,430,508 - IAI46_16370 0.59 +0.3 3,430,508 - IAI46_16370 0.59 +0.7 3,430,521 + IAI46_16370 0.61 +0.8 3,430,521 + IAI46_16370 0.61 +1.0 3,430,521 + IAI46_16370 0.61 +0.5 3,430,611 + IAI46_16370 0.69 -0.7 3,430,612 - IAI46_16370 0.69 -0.3 3,430,768 + IAI46_16370 0.84 -0.2 3,430,812 - IAI46_16370 0.88 +0.1 3,430,843 + +0.4 3,430,876 + +0.5 3,430,880 + +0.2 3,430,880 + -0.9 3,430,881 - +0.0 3,430,934 + +0.3 3,430,935 - +1.2 3,430,936 + +0.5 3,430,936 + -0.6 3,430,937 - +0.1 3,430,937 - -0.2 3,431,059 + IAI46_16375 0.14 +0.9 3,431,102 + IAI46_16375 0.20 -0.2 3,431,229 + IAI46_16375 0.36 -0.6 3,431,707 + +0.5 3,431,802 + +0.5 3,431,802 + -0.8 3,431,870 + IAI46_16380 0.18 +1.0 3,431,870 + IAI46_16380 0.18 +0.0
Or see this region's nucleotide sequence