Strain Fitness in Serratia liquefaciens MT49 around IAI46_15930

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15925 and IAI46_15930 are separated by 145 nucleotidesIAI46_15930 and IAI46_15935 are separated by 235 nucleotides IAI46_15925: IAI46_15925 - flagellar basal body P-ring protein FlgI, at 3,342,751 to 3,343,851 _15925 IAI46_15930: IAI46_15930 - flagellar basal body L-ring protein FlgH, at 3,343,997 to 3,344,695 _15930 IAI46_15935: IAI46_15935 - flagellar basal-body rod protein FlgG, at 3,344,931 to 3,345,713 _15935 Position (kb) 3343 3344 3345Strain fitness (log2 ratio) -1 0 1at 3343.122 kb on + strand, within IAI46_15925at 3343.192 kb on - strand, within IAI46_15925at 3343.192 kb on - strand, within IAI46_15925at 3343.448 kb on + strand, within IAI46_15925at 3343.463 kb on - strand, within IAI46_15925at 3343.987 kb on + strandat 3344.015 kb on + strandat 3344.016 kb on - strandat 3344.016 kb on - strandat 3344.031 kb on - strandat 3344.031 kb on - strandat 3344.076 kb on + strand, within IAI46_15930at 3344.110 kb on + strand, within IAI46_15930at 3344.263 kb on + strand, within IAI46_15930at 3344.320 kb on + strand, within IAI46_15930at 3344.321 kb on - strand, within IAI46_15930at 3344.345 kb on + strand, within IAI46_15930at 3344.345 kb on + strand, within IAI46_15930at 3344.346 kb on - strand, within IAI46_15930at 3344.517 kb on + strand, within IAI46_15930at 3344.517 kb on + strand, within IAI46_15930at 3344.518 kb on - strand, within IAI46_15930at 3344.614 kb on + strand, within IAI46_15930at 3344.615 kb on - strand, within IAI46_15930at 3344.615 kb on - strand, within IAI46_15930at 3344.739 kb on - strandat 3344.740 kb on - strandat 3344.816 kb on + strandat 3344.932 kb on + strandat 3344.933 kb on - strandat 3344.995 kb on + strandat 3344.996 kb on - strandat 3345.061 kb on + strand, within IAI46_15935at 3345.062 kb on - strand, within IAI46_15935at 3345.179 kb on + strand, within IAI46_15935at 3345.373 kb on + strand, within IAI46_15935at 3345.577 kb on + strand, within IAI46_15935at 3345.577 kb on + strand, within IAI46_15935at 3345.659 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,343,122 + IAI46_15925 0.34 +0.3
3,343,192 - IAI46_15925 0.40 -0.7
3,343,192 - IAI46_15925 0.40 +0.5
3,343,448 + IAI46_15925 0.63 +0.9
3,343,463 - IAI46_15925 0.65 +0.1
3,343,987 + +0.9
3,344,015 + -0.0
3,344,016 - +0.6
3,344,016 - -0.5
3,344,031 - -1.0
3,344,031 - -0.3
3,344,076 + IAI46_15930 0.11 +0.1
3,344,110 + IAI46_15930 0.16 -0.3
3,344,263 + IAI46_15930 0.38 +0.6
3,344,320 + IAI46_15930 0.46 +0.7
3,344,321 - IAI46_15930 0.46 -0.9
3,344,345 + IAI46_15930 0.50 +0.7
3,344,345 + IAI46_15930 0.50 +1.3
3,344,346 - IAI46_15930 0.50 -0.5
3,344,517 + IAI46_15930 0.74 -0.4
3,344,517 + IAI46_15930 0.74 +0.7
3,344,518 - IAI46_15930 0.75 -0.9
3,344,614 + IAI46_15930 0.88 -0.1
3,344,615 - IAI46_15930 0.88 +0.0
3,344,615 - IAI46_15930 0.88 +0.3
3,344,739 - +0.6
3,344,740 - +0.5
3,344,816 + +0.5
3,344,932 + -0.2
3,344,933 - -0.4
3,344,995 + -0.4
3,344,996 - -0.4
3,345,061 + IAI46_15935 0.17 -0.9
3,345,062 - IAI46_15935 0.17 -0.2
3,345,179 + IAI46_15935 0.32 -0.2
3,345,373 + IAI46_15935 0.56 +0.8
3,345,577 + IAI46_15935 0.83 -0.3
3,345,577 + IAI46_15935 0.83 -0.0
3,345,659 + +0.4

Or see this region's nucleotide sequence