Strain Fitness in Serratia liquefaciens MT49 around IAI46_15315

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15310 and IAI46_15315 are separated by 653 nucleotidesIAI46_15315 and IAI46_15320 are separated by 11 nucleotides IAI46_15310: IAI46_15310 - porin OmpC, at 3,202,543 to 3,203,622 _15310 IAI46_15315: IAI46_15315 - succinylglutamate desuccinylase, at 3,204,276 to 3,205,259 _15315 IAI46_15320: IAI46_15320 - N-succinylarginine dihydrolase, at 3,205,271 to 3,206,611 _15320 Position (kb) 3204 3205 3206Strain fitness (log2 ratio) -1 0 1 2at 3203.456 kb on + strand, within IAI46_15310at 3203.609 kb on - strandat 3204.135 kb on - strandat 3204.192 kb on + strandat 3204.194 kb on + strandat 3204.236 kb on + strandat 3204.237 kb on - strandat 3204.241 kb on - strandat 3204.246 kb on - strandat 3204.246 kb on - strandat 3204.277 kb on + strandat 3204.642 kb on - strand, within IAI46_15315at 3204.760 kb on + strand, within IAI46_15315at 3204.761 kb on - strand, within IAI46_15315at 3204.833 kb on - strand, within IAI46_15315at 3205.272 kb on + strandat 3205.392 kb on + strandat 3205.396 kb on - strandat 3205.494 kb on - strand, within IAI46_15320at 3205.596 kb on + strand, within IAI46_15320at 3205.690 kb on - strand, within IAI46_15320at 3205.806 kb on + strand, within IAI46_15320at 3205.832 kb on + strand, within IAI46_15320at 3205.833 kb on - strand, within IAI46_15320at 3205.915 kb on + strand, within IAI46_15320at 3205.915 kb on + strand, within IAI46_15320at 3205.915 kb on + strand, within IAI46_15320at 3205.916 kb on - strand, within IAI46_15320at 3205.916 kb on - strand, within IAI46_15320at 3206.056 kb on - strand, within IAI46_15320

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,203,456 + IAI46_15310 0.85 -0.1
3,203,609 - +0.8
3,204,135 - +0.2
3,204,192 + +1.1
3,204,194 + -0.1
3,204,236 + +1.2
3,204,237 - +0.1
3,204,241 - +0.8
3,204,246 - -1.5
3,204,246 - -0.2
3,204,277 + +0.0
3,204,642 - IAI46_15315 0.37 +1.5
3,204,760 + IAI46_15315 0.49 +1.0
3,204,761 - IAI46_15315 0.49 -0.2
3,204,833 - IAI46_15315 0.57 -0.1
3,205,272 + +0.7
3,205,392 + -1.2
3,205,396 - -0.6
3,205,494 - IAI46_15320 0.17 +0.3
3,205,596 + IAI46_15320 0.24 +1.7
3,205,690 - IAI46_15320 0.31 +1.2
3,205,806 + IAI46_15320 0.40 +0.8
3,205,832 + IAI46_15320 0.42 +0.5
3,205,833 - IAI46_15320 0.42 -0.3
3,205,915 + IAI46_15320 0.48 +0.2
3,205,915 + IAI46_15320 0.48 -0.1
3,205,915 + IAI46_15320 0.48 +0.8
3,205,916 - IAI46_15320 0.48 +1.8
3,205,916 - IAI46_15320 0.48 -0.5
3,206,056 - IAI46_15320 0.59 +0.3

Or see this region's nucleotide sequence