Strain Fitness in Serratia liquefaciens MT49 around IAI46_14755

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14745 and IAI46_14750 are separated by 83 nucleotidesIAI46_14750 and IAI46_14755 are separated by 70 nucleotidesIAI46_14755 and IAI46_14760 are separated by 39 nucleotidesIAI46_14760 and IAI46_14765 are separated by 88 nucleotides IAI46_14745: IAI46_14745 - lipoprotein, at 3,123,851 to 3,124,414 _14745 IAI46_14750: IAI46_14750 - hypothetical protein, at 3,124,498 to 3,124,857 _14750 IAI46_14755: IAI46_14755 - ASCH domain-containing protein, at 3,124,928 to 3,125,236 _14755 IAI46_14760: IAI46_14760 - YebG family protein, at 3,125,276 to 3,125,599 _14760 IAI46_14765: IAI46_14765 - ATP-dependent RNA helicase DbpA, at 3,125,688 to 3,127,070 _14765 Position (kb) 3124 3125 3126Strain fitness (log2 ratio) -1 0 1at 3124.036 kb on - strand, within IAI46_14745at 3124.163 kb on + strand, within IAI46_14745at 3124.164 kb on - strand, within IAI46_14745at 3124.214 kb on + strand, within IAI46_14745at 3124.214 kb on + strand, within IAI46_14745at 3124.333 kb on + strand, within IAI46_14745at 3124.396 kb on + strandat 3124.479 kb on - strandat 3124.706 kb on + strand, within IAI46_14750at 3124.804 kb on - strand, within IAI46_14750at 3125.043 kb on - strand, within IAI46_14755at 3125.124 kb on - strand, within IAI46_14755at 3125.170 kb on + strand, within IAI46_14755at 3125.171 kb on - strand, within IAI46_14755at 3125.171 kb on - strand, within IAI46_14755at 3125.269 kb on + strandat 3125.277 kb on + strandat 3125.278 kb on - strandat 3125.278 kb on - strandat 3125.581 kb on - strandat 3125.656 kb on - strandat 3125.656 kb on - strandat 3125.786 kb on - strandat 3125.993 kb on - strand, within IAI46_14765at 3126.122 kb on - strand, within IAI46_14765at 3126.122 kb on - strand, within IAI46_14765

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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3,124,036 - IAI46_14745 0.33 +0.5
3,124,163 + IAI46_14745 0.55 +1.3
3,124,164 - IAI46_14745 0.55 +1.3
3,124,214 + IAI46_14745 0.64 +0.5
3,124,214 + IAI46_14745 0.64 -1.4
3,124,333 + IAI46_14745 0.85 -0.9
3,124,396 + +0.8
3,124,479 - +0.3
3,124,706 + IAI46_14750 0.58 +0.0
3,124,804 - IAI46_14750 0.85 +0.0
3,125,043 - IAI46_14755 0.37 -1.0
3,125,124 - IAI46_14755 0.63 -0.0
3,125,170 + IAI46_14755 0.78 +0.5
3,125,171 - IAI46_14755 0.79 -0.7
3,125,171 - IAI46_14755 0.79 -0.4
3,125,269 + +0.5
3,125,277 + +0.3
3,125,278 - +1.2
3,125,278 - -0.1
3,125,581 - +0.0
3,125,656 - +0.1
3,125,656 - -0.3
3,125,786 - -0.8
3,125,993 - IAI46_14765 0.22 +0.5
3,126,122 - IAI46_14765 0.31 -0.0
3,126,122 - IAI46_14765 0.31 -0.5

Or see this region's nucleotide sequence