Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_14625 and IAI46_14630 are separated by 259 nucleotides IAI46_14630 and IAI46_14635 are separated by 73 nucleotides IAI46_14635 and IAI46_14640 are separated by 19 nucleotides IAI46_14640 and IAI46_14645 overlap by 1 nucleotides
IAI46_14625: IAI46_14625 - Holliday junction branch migration protein RuvA, at 3,100,483 to 3,101,097
_14625
IAI46_14630: IAI46_14630 - crossover junction endodeoxyribonuclease RuvC, at 3,101,357 to 3,101,878
_14630
IAI46_14635: IAI46_14635 - YebC/PmpR family DNA-binding transcriptional regulator, at 3,101,952 to 3,102,695
_14635
IAI46_14640: IAI46_14640 - dihydroneopterin triphosphate diphosphatase, at 3,102,715 to 3,103,161
_14640
IAI46_14645: IAI46_14645 - aspartate--tRNA ligase, at 3,103,161 to 3,104,951
_14645
Position (kb)
3101
3102
3103 Strain fitness (log2 ratio)
-2
-1
0
1 at 3101.158 kb on - strand at 3101.212 kb on - strand at 3101.214 kb on - strand at 3101.214 kb on - strand at 3101.261 kb on + strand at 3101.351 kb on + strand at 3101.352 kb on - strand at 3101.359 kb on - strand at 3101.996 kb on - strand at 3102.051 kb on - strand, within IAI46_14635 at 3102.051 kb on - strand, within IAI46_14635 at 3102.200 kb on - strand, within IAI46_14635 at 3102.681 kb on - strand at 3102.684 kb on - strand at 3103.091 kb on - strand, within IAI46_14640 at 3103.155 kb on - strand at 3103.155 kb on - strand at 3103.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 3,101,158 - -0.5 3,101,212 - -0.5 3,101,214 - -0.1 3,101,214 - +0.2 3,101,261 + -0.1 3,101,351 + -0.3 3,101,352 - +0.8 3,101,359 - -0.1 3,101,996 - +1.2 3,102,051 - IAI46_14635 0.13 -0.1 3,102,051 - IAI46_14635 0.13 +0.9 3,102,200 - IAI46_14635 0.33 -0.9 3,102,681 - -0.1 3,102,684 - +0.2 3,103,091 - IAI46_14640 0.84 -2.4 3,103,155 - -1.0 3,103,155 - -1.0 3,103,155 - -1.2
Or see this region's nucleotide sequence