Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_13915 and IAI46_13920 are separated by 328 nucleotides IAI46_13920 and IAI46_13925 are separated by 170 nucleotides IAI46_13925 and IAI46_13930 are separated by 57 nucleotides
IAI46_13915: IAI46_13915 - orotidine-5'-phosphate decarboxylase, at 2,955,973 to 2,956,701
_13915
IAI46_13920: IAI46_13920 - DUF1471 domain-containing protein, at 2,957,030 to 2,957,290
_13920
IAI46_13925: IAI46_13925 - Arc family DNA-binding protein, at 2,957,461 to 2,957,757
_13925
IAI46_13930: IAI46_13930 - lipopolysaccharide assembly protein LapB, at 2,957,815 to 2,958,984
_13930
Position (kb)
2957
2958 Strain fitness (log2 ratio)
-1
0
1 at 2956.052 kb on + strand, within IAI46_13915 at 2956.052 kb on + strand, within IAI46_13915 at 2956.052 kb on + strand, within IAI46_13915 at 2956.053 kb on - strand, within IAI46_13915 at 2956.053 kb on - strand, within IAI46_13915 at 2956.053 kb on - strand, within IAI46_13915 at 2956.634 kb on + strand at 2956.729 kb on - strand at 2956.732 kb on + strand at 2956.732 kb on + strand at 2956.767 kb on - strand at 2956.816 kb on - strand at 2956.832 kb on - strand at 2956.832 kb on - strand at 2956.880 kb on + strand at 2956.992 kb on + strand at 2957.013 kb on - strand at 2957.229 kb on - strand, within IAI46_13920 at 2957.252 kb on - strand, within IAI46_13920 at 2957.278 kb on + strand at 2957.283 kb on - strand at 2957.288 kb on + strand at 2957.288 kb on + strand at 2957.289 kb on - strand at 2957.294 kb on - strand at 2957.294 kb on - strand at 2957.297 kb on - strand at 2957.300 kb on + strand at 2957.301 kb on - strand at 2957.301 kb on - strand at 2957.330 kb on - strand at 2957.424 kb on + strand at 2957.471 kb on + strand at 2957.475 kb on + strand at 2957.774 kb on + strand at 2957.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 2,956,052 + IAI46_13915 0.11 +0.1 2,956,052 + IAI46_13915 0.11 -0.1 2,956,052 + IAI46_13915 0.11 -0.9 2,956,053 - IAI46_13915 0.11 -0.4 2,956,053 - IAI46_13915 0.11 -1.0 2,956,053 - IAI46_13915 0.11 +0.4 2,956,634 + -1.3 2,956,729 - +0.9 2,956,732 + +0.6 2,956,732 + -0.8 2,956,767 - -0.1 2,956,816 - -0.5 2,956,832 - +1.1 2,956,832 - +0.2 2,956,880 + -0.0 2,956,992 + -1.1 2,957,013 - -0.0 2,957,229 - IAI46_13920 0.76 -1.1 2,957,252 - IAI46_13920 0.85 -1.0 2,957,278 + +0.0 2,957,283 - -1.7 2,957,288 + -0.3 2,957,288 + -0.4 2,957,289 - +0.6 2,957,294 - -0.6 2,957,294 - -0.1 2,957,297 - +0.0 2,957,300 + +1.6 2,957,301 - +0.6 2,957,301 - +0.5 2,957,330 - +1.2 2,957,424 + +0.3 2,957,471 + -0.5 2,957,475 + +0.3 2,957,774 + -0.5 2,957,775 - -0.7
Or see this region's nucleotide sequence