Strain Fitness in Serratia liquefaciens MT49 around IAI46_13920

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13915 and IAI46_13920 are separated by 328 nucleotidesIAI46_13920 and IAI46_13925 are separated by 170 nucleotidesIAI46_13925 and IAI46_13930 are separated by 57 nucleotides IAI46_13915: IAI46_13915 - orotidine-5'-phosphate decarboxylase, at 2,955,973 to 2,956,701 _13915 IAI46_13920: IAI46_13920 - DUF1471 domain-containing protein, at 2,957,030 to 2,957,290 _13920 IAI46_13925: IAI46_13925 - Arc family DNA-binding protein, at 2,957,461 to 2,957,757 _13925 IAI46_13930: IAI46_13930 - lipopolysaccharide assembly protein LapB, at 2,957,815 to 2,958,984 _13930 Position (kb) 2957 2958Strain fitness (log2 ratio) -1 0 1at 2956.052 kb on + strand, within IAI46_13915at 2956.052 kb on + strand, within IAI46_13915at 2956.052 kb on + strand, within IAI46_13915at 2956.053 kb on - strand, within IAI46_13915at 2956.053 kb on - strand, within IAI46_13915at 2956.053 kb on - strand, within IAI46_13915at 2956.634 kb on + strandat 2956.729 kb on - strandat 2956.732 kb on + strandat 2956.732 kb on + strandat 2956.767 kb on - strandat 2956.816 kb on - strandat 2956.832 kb on - strandat 2956.832 kb on - strandat 2956.880 kb on + strandat 2956.992 kb on + strandat 2957.013 kb on - strandat 2957.229 kb on - strand, within IAI46_13920at 2957.252 kb on - strand, within IAI46_13920at 2957.278 kb on + strandat 2957.283 kb on - strandat 2957.288 kb on + strandat 2957.288 kb on + strandat 2957.289 kb on - strandat 2957.294 kb on - strandat 2957.294 kb on - strandat 2957.297 kb on - strandat 2957.300 kb on + strandat 2957.301 kb on - strandat 2957.301 kb on - strandat 2957.330 kb on - strandat 2957.424 kb on + strandat 2957.471 kb on + strandat 2957.475 kb on + strandat 2957.774 kb on + strandat 2957.775 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,956,052 + IAI46_13915 0.11 +0.1
2,956,052 + IAI46_13915 0.11 -0.1
2,956,052 + IAI46_13915 0.11 -0.9
2,956,053 - IAI46_13915 0.11 -0.4
2,956,053 - IAI46_13915 0.11 -1.0
2,956,053 - IAI46_13915 0.11 +0.4
2,956,634 + -1.3
2,956,729 - +0.9
2,956,732 + +0.6
2,956,732 + -0.8
2,956,767 - -0.1
2,956,816 - -0.5
2,956,832 - +1.1
2,956,832 - +0.2
2,956,880 + -0.0
2,956,992 + -1.1
2,957,013 - -0.0
2,957,229 - IAI46_13920 0.76 -1.1
2,957,252 - IAI46_13920 0.85 -1.0
2,957,278 + +0.0
2,957,283 - -1.7
2,957,288 + -0.3
2,957,288 + -0.4
2,957,289 - +0.6
2,957,294 - -0.6
2,957,294 - -0.1
2,957,297 - +0.0
2,957,300 + +1.6
2,957,301 - +0.6
2,957,301 - +0.5
2,957,330 - +1.2
2,957,424 + +0.3
2,957,471 + -0.5
2,957,475 + +0.3
2,957,774 + -0.5
2,957,775 - -0.7

Or see this region's nucleotide sequence