Strain Fitness in Serratia liquefaciens MT49 around IAI46_13425

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13420 and IAI46_13425 are separated by 140 nucleotidesIAI46_13425 and IAI46_13430 are separated by 215 nucleotides IAI46_13420: IAI46_13420 - tRNA 2-thiocytidine(32) synthetase TtcA, at 2,867,860 to 2,868,792 _13420 IAI46_13425: IAI46_13425 - VOC family protein, at 2,868,933 to 2,869,331 _13425 IAI46_13430: IAI46_13430 - zinc transporter ZntB, at 2,869,547 to 2,870,530 _13430 Position (kb) 2868 2869 2870Strain fitness (log2 ratio) -2 -1 0 1at 2868.006 kb on + strand, within IAI46_13420at 2868.016 kb on + strand, within IAI46_13420at 2868.016 kb on + strand, within IAI46_13420at 2868.017 kb on - strand, within IAI46_13420at 2868.120 kb on + strand, within IAI46_13420at 2868.181 kb on + strand, within IAI46_13420at 2868.181 kb on + strand, within IAI46_13420at 2868.342 kb on + strand, within IAI46_13420at 2868.342 kb on + strand, within IAI46_13420at 2868.343 kb on - strand, within IAI46_13420at 2868.444 kb on + strand, within IAI46_13420at 2868.510 kb on + strand, within IAI46_13420at 2868.630 kb on + strand, within IAI46_13420at 2868.790 kb on + strandat 2868.790 kb on + strandat 2868.790 kb on + strandat 2868.791 kb on - strandat 2868.977 kb on + strand, within IAI46_13425at 2869.025 kb on - strand, within IAI46_13425at 2869.060 kb on + strand, within IAI46_13425at 2869.066 kb on - strand, within IAI46_13425at 2869.419 kb on + strandat 2869.523 kb on - strandat 2869.694 kb on - strand, within IAI46_13430at 2869.729 kb on - strand, within IAI46_13430at 2869.790 kb on - strand, within IAI46_13430at 2869.844 kb on - strand, within IAI46_13430at 2869.930 kb on + strand, within IAI46_13430at 2869.930 kb on + strand, within IAI46_13430at 2869.931 kb on - strand, within IAI46_13430at 2869.931 kb on - strand, within IAI46_13430at 2869.931 kb on - strand, within IAI46_13430at 2869.931 kb on - strand, within IAI46_13430at 2869.932 kb on + strand, within IAI46_13430at 2869.933 kb on - strand, within IAI46_13430at 2869.933 kb on - strand, within IAI46_13430at 2870.082 kb on - strand, within IAI46_13430

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,868,006 + IAI46_13420 0.16 +0.3
2,868,016 + IAI46_13420 0.17 -1.5
2,868,016 + IAI46_13420 0.17 -0.3
2,868,017 - IAI46_13420 0.17 +0.4
2,868,120 + IAI46_13420 0.28 +0.8
2,868,181 + IAI46_13420 0.34 -1.9
2,868,181 + IAI46_13420 0.34 -0.6
2,868,342 + IAI46_13420 0.52 +0.3
2,868,342 + IAI46_13420 0.52 -0.6
2,868,343 - IAI46_13420 0.52 -1.1
2,868,444 + IAI46_13420 0.63 +0.6
2,868,510 + IAI46_13420 0.70 +0.5
2,868,630 + IAI46_13420 0.83 -0.2
2,868,790 + +0.4
2,868,790 + +1.5
2,868,790 + +0.8
2,868,791 - +0.8
2,868,977 + IAI46_13425 0.11 -0.9
2,869,025 - IAI46_13425 0.23 -0.1
2,869,060 + IAI46_13425 0.32 -0.1
2,869,066 - IAI46_13425 0.33 -1.2
2,869,419 + -0.3
2,869,523 - -0.3
2,869,694 - IAI46_13430 0.15 -0.2
2,869,729 - IAI46_13430 0.18 -0.7
2,869,790 - IAI46_13430 0.25 +0.5
2,869,844 - IAI46_13430 0.30 +0.8
2,869,930 + IAI46_13430 0.39 +0.8
2,869,930 + IAI46_13430 0.39 +0.3
2,869,931 - IAI46_13430 0.39 +1.7
2,869,931 - IAI46_13430 0.39 +0.6
2,869,931 - IAI46_13430 0.39 -0.8
2,869,931 - IAI46_13430 0.39 -0.4
2,869,932 + IAI46_13430 0.39 +0.8
2,869,933 - IAI46_13430 0.39 +1.3
2,869,933 - IAI46_13430 0.39 -0.9
2,870,082 - IAI46_13430 0.54 -0.5

Or see this region's nucleotide sequence