Strain Fitness in Serratia liquefaciens MT49 around IAI46_12655

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12650 and IAI46_12655 are separated by 130 nucleotidesIAI46_12655 and IAI46_12660 are separated by 85 nucleotidesIAI46_12660 and IAI46_12665 are separated by 5 nucleotides IAI46_12650: IAI46_12650 - TonB-dependent copper receptor, at 2,688,450 to 2,690,510 _12650 IAI46_12655: IAI46_12655 - LysR family transcriptional regulator, at 2,690,641 to 2,691,537 _12655 IAI46_12660: IAI46_12660 - NAD(P)H-dependent oxidoreductase, at 2,691,623 to 2,692,396 _12660 IAI46_12665: IAI46_12665 - aldehyde dehydrogenase family protein, at 2,692,402 to 2,692,770 _12665 Position (kb) 2690 2691 2692Strain fitness (log2 ratio) -1 0 1 2at 2689.698 kb on + strand, within IAI46_12650at 2689.715 kb on + strand, within IAI46_12650at 2689.748 kb on + strand, within IAI46_12650at 2689.827 kb on + strand, within IAI46_12650at 2689.932 kb on - strand, within IAI46_12650at 2689.946 kb on + strand, within IAI46_12650at 2689.965 kb on + strand, within IAI46_12650at 2689.988 kb on + strand, within IAI46_12650at 2689.988 kb on + strand, within IAI46_12650at 2689.988 kb on + strand, within IAI46_12650at 2690.343 kb on - strandat 2690.344 kb on - strandat 2690.426 kb on + strandat 2690.426 kb on + strandat 2690.427 kb on - strandat 2690.454 kb on - strandat 2690.509 kb on - strandat 2690.531 kb on + strandat 2690.531 kb on + strandat 2690.531 kb on + strandat 2690.605 kb on - strandat 2690.636 kb on + strandat 2690.637 kb on - strandat 2690.637 kb on - strandat 2690.643 kb on - strandat 2690.660 kb on - strandat 2690.662 kb on - strandat 2690.713 kb on + strandat 2690.714 kb on - strandat 2690.714 kb on - strandat 2690.714 kb on - strandat 2691.024 kb on - strand, within IAI46_12655at 2691.024 kb on - strand, within IAI46_12655at 2691.095 kb on - strand, within IAI46_12655at 2691.243 kb on + strand, within IAI46_12655at 2691.550 kb on - strandat 2691.572 kb on + strandat 2691.589 kb on + strandat 2691.666 kb on + strandat 2691.667 kb on - strandat 2691.859 kb on + strand, within IAI46_12660at 2692.145 kb on - strand, within IAI46_12660at 2692.323 kb on - strandat 2692.388 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,689,698 + IAI46_12650 0.61 +0.2
2,689,715 + IAI46_12650 0.61 +0.9
2,689,748 + IAI46_12650 0.63 +0.5
2,689,827 + IAI46_12650 0.67 +0.2
2,689,932 - IAI46_12650 0.72 -0.3
2,689,946 + IAI46_12650 0.73 +0.4
2,689,965 + IAI46_12650 0.74 +2.0
2,689,988 + IAI46_12650 0.75 -1.2
2,689,988 + IAI46_12650 0.75 -0.2
2,689,988 + IAI46_12650 0.75 -0.7
2,690,343 - +0.6
2,690,344 - +1.0
2,690,426 + +0.3
2,690,426 + +0.7
2,690,427 - -0.2
2,690,454 - +0.5
2,690,509 - +0.3
2,690,531 + +2.0
2,690,531 + +1.6
2,690,531 + -0.2
2,690,605 - -0.4
2,690,636 + -0.3
2,690,637 - -0.6
2,690,637 - +0.2
2,690,643 - +0.2
2,690,660 - +0.2
2,690,662 - -0.6
2,690,713 + +0.7
2,690,714 - -0.3
2,690,714 - -0.4
2,690,714 - -0.4
2,691,024 - IAI46_12655 0.43 -0.5
2,691,024 - IAI46_12655 0.43 +0.7
2,691,095 - IAI46_12655 0.51 -0.4
2,691,243 + IAI46_12655 0.67 +0.6
2,691,550 - -0.4
2,691,572 + -0.4
2,691,589 + +1.4
2,691,666 + +2.0
2,691,667 - -0.2
2,691,859 + IAI46_12660 0.30 +0.6
2,692,145 - IAI46_12660 0.67 +0.8
2,692,323 - -0.5
2,692,388 - +1.2

Or see this region's nucleotide sequence