Strain Fitness in Serratia liquefaciens MT49 around IAI46_12585

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12575 and IAI46_12580 are separated by 165 nucleotidesIAI46_12580 and IAI46_12585 are separated by 18 nucleotidesIAI46_12585 and IAI46_12590 are separated by 235 nucleotides IAI46_12575: IAI46_12575 - protein deglycase HchA, at 2,672,853 to 2,673,728 _12575 IAI46_12580: IAI46_12580 - hypothetical protein, at 2,673,894 to 2,674,115 _12580 IAI46_12585: IAI46_12585 - hypothetical protein, at 2,674,134 to 2,675,105 _12585 IAI46_12590: IAI46_12590 - helix-turn-helix transcriptional regulator, at 2,675,341 to 2,676,837 _12590 Position (kb) 2674 2675 2676Strain fitness (log2 ratio) -1 0 1at 2673.219 kb on + strand, within IAI46_12575at 2673.220 kb on - strand, within IAI46_12575at 2673.294 kb on + strand, within IAI46_12575at 2673.332 kb on + strand, within IAI46_12575at 2673.749 kb on + strandat 2673.916 kb on + strandat 2674.000 kb on + strand, within IAI46_12580at 2674.095 kb on - strandat 2674.343 kb on - strand, within IAI46_12585at 2674.343 kb on - strand, within IAI46_12585at 2674.418 kb on + strand, within IAI46_12585at 2674.419 kb on - strand, within IAI46_12585at 2674.530 kb on - strand, within IAI46_12585at 2675.017 kb on + strandat 2675.018 kb on - strandat 2675.093 kb on - strandat 2675.119 kb on - strandat 2675.140 kb on - strandat 2675.223 kb on + strandat 2675.261 kb on + strandat 2675.262 kb on - strandat 2675.262 kb on - strandat 2675.521 kb on + strand, within IAI46_12590at 2675.521 kb on + strand, within IAI46_12590at 2675.676 kb on - strand, within IAI46_12590at 2675.676 kb on - strand, within IAI46_12590at 2675.833 kb on + strand, within IAI46_12590at 2675.833 kb on + strand, within IAI46_12590at 2675.838 kb on - strand, within IAI46_12590at 2675.874 kb on + strand, within IAI46_12590at 2675.875 kb on - strand, within IAI46_12590

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,673,219 + IAI46_12575 0.42 -0.5
2,673,220 - IAI46_12575 0.42 -0.4
2,673,294 + IAI46_12575 0.50 +1.0
2,673,332 + IAI46_12575 0.55 -0.8
2,673,749 + +0.4
2,673,916 + +1.2
2,674,000 + IAI46_12580 0.48 +0.4
2,674,095 - +0.8
2,674,343 - IAI46_12585 0.22 -0.4
2,674,343 - IAI46_12585 0.22 -1.4
2,674,418 + IAI46_12585 0.29 -0.6
2,674,419 - IAI46_12585 0.29 +1.2
2,674,530 - IAI46_12585 0.41 -0.8
2,675,017 + +0.0
2,675,018 - +0.6
2,675,093 - -0.8
2,675,119 - +0.4
2,675,140 - +1.7
2,675,223 + +0.5
2,675,261 + +0.3
2,675,262 - -0.4
2,675,262 - -0.2
2,675,521 + IAI46_12590 0.12 -0.6
2,675,521 + IAI46_12590 0.12 +0.8
2,675,676 - IAI46_12590 0.22 +0.7
2,675,676 - IAI46_12590 0.22 -0.7
2,675,833 + IAI46_12590 0.33 +0.6
2,675,833 + IAI46_12590 0.33 +1.0
2,675,838 - IAI46_12590 0.33 +0.7
2,675,874 + IAI46_12590 0.36 -0.9
2,675,875 - IAI46_12590 0.36 +0.4

Or see this region's nucleotide sequence