Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_12575 and IAI46_12580 are separated by 165 nucleotides IAI46_12580 and IAI46_12585 are separated by 18 nucleotides IAI46_12585 and IAI46_12590 are separated by 235 nucleotides
IAI46_12575: IAI46_12575 - protein deglycase HchA, at 2,672,853 to 2,673,728
_12575
IAI46_12580: IAI46_12580 - hypothetical protein, at 2,673,894 to 2,674,115
_12580
IAI46_12585: IAI46_12585 - hypothetical protein, at 2,674,134 to 2,675,105
_12585
IAI46_12590: IAI46_12590 - helix-turn-helix transcriptional regulator, at 2,675,341 to 2,676,837
_12590
Position (kb)
2674
2675
2676 Strain fitness (log2 ratio)
-1
0
1 at 2673.219 kb on + strand, within IAI46_12575 at 2673.220 kb on - strand, within IAI46_12575 at 2673.294 kb on + strand, within IAI46_12575 at 2673.332 kb on + strand, within IAI46_12575 at 2673.749 kb on + strand at 2673.916 kb on + strand at 2674.000 kb on + strand, within IAI46_12580 at 2674.095 kb on - strand at 2674.343 kb on - strand, within IAI46_12585 at 2674.343 kb on - strand, within IAI46_12585 at 2674.418 kb on + strand, within IAI46_12585 at 2674.419 kb on - strand, within IAI46_12585 at 2674.530 kb on - strand, within IAI46_12585 at 2675.017 kb on + strand at 2675.018 kb on - strand at 2675.093 kb on - strand at 2675.119 kb on - strand at 2675.140 kb on - strand at 2675.223 kb on + strand at 2675.261 kb on + strand at 2675.262 kb on - strand at 2675.262 kb on - strand at 2675.521 kb on + strand, within IAI46_12590 at 2675.521 kb on + strand, within IAI46_12590 at 2675.676 kb on - strand, within IAI46_12590 at 2675.676 kb on - strand, within IAI46_12590 at 2675.833 kb on + strand, within IAI46_12590 at 2675.833 kb on + strand, within IAI46_12590 at 2675.838 kb on - strand, within IAI46_12590 at 2675.874 kb on + strand, within IAI46_12590 at 2675.875 kb on - strand, within IAI46_12590
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 2,673,219 + IAI46_12575 0.42 -0.5 2,673,220 - IAI46_12575 0.42 -0.4 2,673,294 + IAI46_12575 0.50 +1.0 2,673,332 + IAI46_12575 0.55 -0.8 2,673,749 + +0.4 2,673,916 + +1.2 2,674,000 + IAI46_12580 0.48 +0.4 2,674,095 - +0.8 2,674,343 - IAI46_12585 0.22 -0.4 2,674,343 - IAI46_12585 0.22 -1.4 2,674,418 + IAI46_12585 0.29 -0.6 2,674,419 - IAI46_12585 0.29 +1.2 2,674,530 - IAI46_12585 0.41 -0.8 2,675,017 + +0.0 2,675,018 - +0.6 2,675,093 - -0.8 2,675,119 - +0.4 2,675,140 - +1.7 2,675,223 + +0.5 2,675,261 + +0.3 2,675,262 - -0.4 2,675,262 - -0.2 2,675,521 + IAI46_12590 0.12 -0.6 2,675,521 + IAI46_12590 0.12 +0.8 2,675,676 - IAI46_12590 0.22 +0.7 2,675,676 - IAI46_12590 0.22 -0.7 2,675,833 + IAI46_12590 0.33 +0.6 2,675,833 + IAI46_12590 0.33 +1.0 2,675,838 - IAI46_12590 0.33 +0.7 2,675,874 + IAI46_12590 0.36 -0.9 2,675,875 - IAI46_12590 0.36 +0.4
Or see this region's nucleotide sequence