Strain Fitness in Serratia liquefaciens MT49 around IAI46_12450

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12445 and IAI46_12450 are separated by 169 nucleotidesIAI46_12450 and IAI46_12455 are separated by 24 nucleotidesIAI46_12455 and IAI46_12460 overlap by 4 nucleotides IAI46_12445: IAI46_12445 - GMC family oxidoreductase N-terminal domain-containing protein, at 2,644,189 to 2,645,811 _12445 IAI46_12450: IAI46_12450 - SDR family oxidoreductase, at 2,645,981 to 2,646,760 _12450 IAI46_12455: IAI46_12455 - FCD domain-containing protein, at 2,646,785 to 2,647,525 _12455 IAI46_12460: IAI46_12460 - fumarylacetoacetate hydrolase family protein, at 2,647,522 to 2,648,367 _12460 Position (kb) 2645 2646 2647Strain fitness (log2 ratio) -2 -1 0 1at 2645.106 kb on + strand, within IAI46_12445at 2645.110 kb on + strand, within IAI46_12445at 2645.248 kb on - strand, within IAI46_12445at 2645.306 kb on + strand, within IAI46_12445at 2645.442 kb on - strand, within IAI46_12445at 2645.525 kb on + strand, within IAI46_12445at 2645.622 kb on - strand, within IAI46_12445at 2645.787 kb on - strandat 2645.925 kb on + strandat 2645.925 kb on + strandat 2646.016 kb on - strandat 2646.177 kb on + strand, within IAI46_12450at 2646.177 kb on + strand, within IAI46_12450at 2646.242 kb on - strand, within IAI46_12450at 2646.245 kb on - strand, within IAI46_12450at 2646.706 kb on + strandat 2646.756 kb on + strandat 2647.060 kb on + strand, within IAI46_12455at 2647.095 kb on + strand, within IAI46_12455at 2647.443 kb on - strand, within IAI46_12455at 2647.488 kb on + strandat 2647.654 kb on - strand, within IAI46_12460

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,645,106 + IAI46_12445 0.57 -0.5
2,645,110 + IAI46_12445 0.57 +1.2
2,645,248 - IAI46_12445 0.65 -2.0
2,645,306 + IAI46_12445 0.69 +0.2
2,645,442 - IAI46_12445 0.77 -2.2
2,645,525 + IAI46_12445 0.82 +0.2
2,645,622 - IAI46_12445 0.88 +0.3
2,645,787 - +0.8
2,645,925 + +1.0
2,645,925 + -0.4
2,646,016 - +0.5
2,646,177 + IAI46_12450 0.25 -0.2
2,646,177 + IAI46_12450 0.25 +0.2
2,646,242 - IAI46_12450 0.33 +0.7
2,646,245 - IAI46_12450 0.34 +0.5
2,646,706 + +0.3
2,646,756 + -1.4
2,647,060 + IAI46_12455 0.37 +0.5
2,647,095 + IAI46_12455 0.42 -0.5
2,647,443 - IAI46_12455 0.89 +1.0
2,647,488 + +0.3
2,647,654 - IAI46_12460 0.16 +0.7

Or see this region's nucleotide sequence