Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_12085 and IAI46_12090 overlap by 4 nucleotides IAI46_12090 and IAI46_12095 are separated by 16 nucleotides IAI46_12095 and IAI46_12100 are separated by 17 nucleotides
IAI46_12085: IAI46_12085 - amino acid ABC transporter permease, at 2,556,871 to 2,557,788
_12085
IAI46_12090: IAI46_12090 - ABC transporter substrate-binding protein, at 2,557,785 to 2,558,699
_12090
IAI46_12095: IAI46_12095 - LLM class flavin-dependent oxidoreductase, at 2,558,716 to 2,560,053
_12095
IAI46_12100: IAI46_12100 - MmgE/PrpD family protein, at 2,560,071 to 2,561,390
_12100
Position (kb)
2558
2559
2560
2561 Strain fitness (log2 ratio)
-2
-1
0
1 at 2557.992 kb on - strand, within IAI46_12090 at 2558.023 kb on + strand, within IAI46_12090 at 2558.218 kb on + strand, within IAI46_12090 at 2558.342 kb on - strand, within IAI46_12090 at 2558.480 kb on - strand, within IAI46_12090 at 2558.499 kb on - strand, within IAI46_12090 at 2558.499 kb on - strand, within IAI46_12090 at 2558.525 kb on - strand, within IAI46_12090 at 2558.525 kb on - strand, within IAI46_12090 at 2558.538 kb on + strand, within IAI46_12090 at 2558.539 kb on - strand, within IAI46_12090 at 2558.624 kb on - strand at 2558.648 kb on + strand at 2558.648 kb on + strand at 2558.649 kb on - strand at 2558.674 kb on - strand at 2558.786 kb on + strand at 2558.787 kb on - strand at 2558.793 kb on - strand at 2558.822 kb on - strand at 2558.880 kb on + strand, within IAI46_12095 at 2558.886 kb on + strand, within IAI46_12095 at 2558.886 kb on + strand, within IAI46_12095 at 2559.526 kb on + strand, within IAI46_12095 at 2559.526 kb on + strand, within IAI46_12095 at 2559.526 kb on + strand, within IAI46_12095 at 2559.563 kb on + strand, within IAI46_12095 at 2559.563 kb on + strand, within IAI46_12095 at 2560.019 kb on - strand at 2560.047 kb on + strand at 2560.058 kb on - strand at 2560.069 kb on + strand at 2560.436 kb on - strand, within IAI46_12100 at 2560.481 kb on + strand, within IAI46_12100 at 2560.482 kb on - strand, within IAI46_12100 at 2560.545 kb on - strand, within IAI46_12100 at 2560.665 kb on - strand, within IAI46_12100 at 2560.927 kb on + strand, within IAI46_12100 at 2560.991 kb on + strand, within IAI46_12100 at 2561.038 kb on - strand, within IAI46_12100 at 2561.051 kb on - strand, within IAI46_12100
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 2,557,992 - IAI46_12090 0.23 +0.1 2,558,023 + IAI46_12090 0.26 -0.8 2,558,218 + IAI46_12090 0.47 -0.0 2,558,342 - IAI46_12090 0.61 -1.0 2,558,480 - IAI46_12090 0.76 -0.1 2,558,499 - IAI46_12090 0.78 +0.4 2,558,499 - IAI46_12090 0.78 -0.9 2,558,525 - IAI46_12090 0.81 +0.6 2,558,525 - IAI46_12090 0.81 +0.1 2,558,538 + IAI46_12090 0.82 -0.3 2,558,539 - IAI46_12090 0.82 +0.9 2,558,624 - -0.2 2,558,648 + +0.4 2,558,648 + +0.2 2,558,649 - +1.0 2,558,674 - -0.6 2,558,786 + -1.4 2,558,787 - +0.6 2,558,793 - +0.9 2,558,822 - -0.2 2,558,880 + IAI46_12095 0.12 +0.2 2,558,886 + IAI46_12095 0.13 +0.0 2,558,886 + IAI46_12095 0.13 +1.0 2,559,526 + IAI46_12095 0.61 +1.4 2,559,526 + IAI46_12095 0.61 -2.1 2,559,526 + IAI46_12095 0.61 -0.5 2,559,563 + IAI46_12095 0.63 +0.0 2,559,563 + IAI46_12095 0.63 +0.9 2,560,019 - -0.7 2,560,047 + -0.0 2,560,058 - -0.9 2,560,069 + +0.4 2,560,436 - IAI46_12100 0.28 +1.2 2,560,481 + IAI46_12100 0.31 +1.7 2,560,482 - IAI46_12100 0.31 +1.0 2,560,545 - IAI46_12100 0.36 +1.2 2,560,665 - IAI46_12100 0.45 +0.9 2,560,927 + IAI46_12100 0.65 +0.5 2,560,991 + IAI46_12100 0.70 -1.6 2,561,038 - IAI46_12100 0.73 +0.3 2,561,051 - IAI46_12100 0.74 -0.0
Or see this region's nucleotide sequence