Strain Fitness in Serratia liquefaciens MT49 around IAI46_11015

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11010 and IAI46_11015 are separated by 399 nucleotidesIAI46_11015 and IAI46_11020 overlap by 14 nucleotidesIAI46_11020 and IAI46_11025 overlap by 1 nucleotides IAI46_11010: IAI46_11010 - vitamin B12 ABC transporter ATP-binding protein BtuD, at 2,325,656 to 2,326,411 _11010 IAI46_11015: IAI46_11015 - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 2,326,811 to 2,327,965 _11015 IAI46_11020: IAI46_11020 - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 2,327,952 to 2,328,932 _11020 IAI46_11025: IAI46_11025 - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 2,328,932 to 2,330,914 _11025 Position (kb) 2326 2327 2328Strain fitness (log2 ratio) -2 -1 0 1 2at 2325.875 kb on + strand, within IAI46_11010at 2325.880 kb on - strand, within IAI46_11010at 2326.063 kb on - strand, within IAI46_11010at 2326.183 kb on - strand, within IAI46_11010at 2326.185 kb on + strand, within IAI46_11010at 2326.185 kb on + strand, within IAI46_11010at 2326.465 kb on - strandat 2326.468 kb on + strandat 2326.667 kb on - strandat 2326.702 kb on + strandat 2326.714 kb on + strandat 2326.770 kb on + strandat 2326.771 kb on - strandat 2326.811 kb on - strandat 2326.878 kb on + strandat 2327.182 kb on + strand, within IAI46_11015at 2327.182 kb on + strand, within IAI46_11015at 2327.198 kb on + strand, within IAI46_11015at 2327.198 kb on + strand, within IAI46_11015at 2327.511 kb on - strand, within IAI46_11015at 2327.517 kb on - strand, within IAI46_11015at 2327.590 kb on + strand, within IAI46_11015at 2327.609 kb on + strand, within IAI46_11015at 2327.807 kb on + strand, within IAI46_11015at 2328.054 kb on - strand, within IAI46_11020at 2328.081 kb on - strand, within IAI46_11020at 2328.120 kb on - strand, within IAI46_11020at 2328.183 kb on + strand, within IAI46_11020at 2328.183 kb on + strand, within IAI46_11020at 2328.183 kb on + strand, within IAI46_11020at 2328.184 kb on - strand, within IAI46_11020at 2328.386 kb on + strand, within IAI46_11020at 2328.533 kb on + strand, within IAI46_11020at 2328.536 kb on + strand, within IAI46_11020at 2328.605 kb on + strand, within IAI46_11020at 2328.831 kb on + strand, within IAI46_11020at 2328.832 kb on - strand, within IAI46_11020at 2328.842 kb on + strandat 2328.874 kb on - strandat 2328.914 kb on + strandat 2328.940 kb on + strandat 2328.945 kb on + strandat 2328.945 kb on + strandat 2328.953 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,325,875 + IAI46_11010 0.29 +1.3
2,325,880 - IAI46_11010 0.30 +1.2
2,326,063 - IAI46_11010 0.54 +1.9
2,326,183 - IAI46_11010 0.70 +0.2
2,326,185 + IAI46_11010 0.70 -0.1
2,326,185 + IAI46_11010 0.70 -0.3
2,326,465 - +0.0
2,326,468 + +0.8
2,326,667 - -0.6
2,326,702 + +0.7
2,326,714 + -0.9
2,326,770 + +0.9
2,326,771 - -1.0
2,326,811 - -0.7
2,326,878 + -1.4
2,327,182 + IAI46_11015 0.32 +0.1
2,327,182 + IAI46_11015 0.32 +0.6
2,327,198 + IAI46_11015 0.34 +0.1
2,327,198 + IAI46_11015 0.34 -0.4
2,327,511 - IAI46_11015 0.61 +0.6
2,327,517 - IAI46_11015 0.61 +0.3
2,327,590 + IAI46_11015 0.67 -0.9
2,327,609 + IAI46_11015 0.69 +0.1
2,327,807 + IAI46_11015 0.86 +0.3
2,328,054 - IAI46_11020 0.10 -2.0
2,328,081 - IAI46_11020 0.13 +0.5
2,328,120 - IAI46_11020 0.17 +1.0
2,328,183 + IAI46_11020 0.24 +0.6
2,328,183 + IAI46_11020 0.24 +0.5
2,328,183 + IAI46_11020 0.24 -0.2
2,328,184 - IAI46_11020 0.24 +0.2
2,328,386 + IAI46_11020 0.44 -0.5
2,328,533 + IAI46_11020 0.59 +0.2
2,328,536 + IAI46_11020 0.60 -0.4
2,328,605 + IAI46_11020 0.67 -0.4
2,328,831 + IAI46_11020 0.90 -0.6
2,328,832 - IAI46_11020 0.90 -1.4
2,328,842 + +1.3
2,328,874 - -2.2
2,328,914 + +1.3
2,328,940 + +1.0
2,328,945 + +0.6
2,328,945 + +0.8
2,328,953 + +0.3

Or see this region's nucleotide sequence