Strain Fitness in Serratia liquefaciens MT49 around IAI46_10935

Experiment: dichromate 20 uM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10925 and IAI46_10930 are separated by 38 nucleotidesIAI46_10930 and IAI46_10935 are separated by 133 nucleotidesIAI46_10935 and IAI46_10940 are separated by 247 nucleotides IAI46_10925: IAI46_10925 - ABC transporter substrate-binding protein, at 2,309,751 to 2,310,884 _10925 IAI46_10930: IAI46_10930 - MarC family NAAT transporter, at 2,310,923 to 2,311,600 _10930 IAI46_10935: IAI46_10935 - hypothetical protein, at 2,311,734 to 2,311,955 _10935 IAI46_10940: IAI46_10940 - CAP-Gly protein, at 2,312,203 to 2,313,243 _10940 Position (kb) 2311 2312Strain fitness (log2 ratio) -2 -1 0 1at 2310.805 kb on - strandat 2310.918 kb on + strandat 2310.940 kb on - strandat 2310.973 kb on + strandat 2310.974 kb on - strandat 2310.988 kb on + strandat 2310.988 kb on + strandat 2310.989 kb on - strandat 2311.423 kb on - strand, within IAI46_10930at 2311.453 kb on - strand, within IAI46_10930at 2311.590 kb on - strandat 2311.600 kb on + strandat 2311.717 kb on - strandat 2311.781 kb on + strand, within IAI46_10935at 2312.080 kb on - strandat 2312.085 kb on + strandat 2312.144 kb on - strandat 2312.199 kb on + strandat 2312.202 kb on + strandat 2312.202 kb on + strandat 2312.430 kb on + strand, within IAI46_10940at 2312.525 kb on + strand, within IAI46_10940at 2312.526 kb on - strand, within IAI46_10940at 2312.949 kb on + strand, within IAI46_10940

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
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2,310,805 - +0.4
2,310,918 + -1.3
2,310,940 - -0.3
2,310,973 + -0.2
2,310,974 - -0.5
2,310,988 + +0.7
2,310,988 + +0.3
2,310,989 - -1.4
2,311,423 - IAI46_10930 0.74 -2.0
2,311,453 - IAI46_10930 0.78 +0.4
2,311,590 - -0.0
2,311,600 + +0.7
2,311,717 - +0.1
2,311,781 + IAI46_10935 0.21 +0.8
2,312,080 - +0.2
2,312,085 + -1.0
2,312,144 - +0.1
2,312,199 + -1.4
2,312,202 + +0.3
2,312,202 + +0.2
2,312,430 + IAI46_10940 0.22 +0.4
2,312,525 + IAI46_10940 0.31 +1.6
2,312,526 - IAI46_10940 0.31 +1.0
2,312,949 + IAI46_10940 0.72 -0.2

Or see this region's nucleotide sequence